Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27430 251 / 8e-86 Signal peptidase subunit (.1) AT3G05230 231 / 1e-77 Signal peptidase subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001092 [exp] 261 / 2e-89 AT5G27430 303 / 3e-107 Signal peptidase subunit (.1) Lus10040138 [exp] 257 / 7e-88 AT5G27430 301 / 1e-106 Signal peptidase subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036200 [exp] 255 / 4e-87 AT5G27430 252 / 5e-87 Signal peptidase subunit (.1) Potri.018G058000 [exp] 251 / 1e-85 AT5G27430 252 / 6e-87 Signal peptidase subunit (.1) Potri.006G234600 [exp] 236 / 2e-79 AT5G27430 266 / 2e-92 Signal peptidase subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04573 [flax] [poplar] SPC22 Signal peptidase subunit
Representative CDS sequence Show only first row Show all	>Lus10004463 pacid=23169700 polypeptide=Lus10004463 locus=Lus10004463.g ID=Lus10004463.BGIv1.0 annot-version=v1.0 ATGAAATTCCGCCACATCAGCCAAAGCCGGCCAAAAGAGACCTCACTGAAGACTAGTAGTGTTCAATTTCCGGCTAATCCCCAGAGATCAACGCCTCGAA AATCTCTTTCTTACTCCCTAAAATCACGCTCCCAGCGGCGCCGGAGTCCACCACCCGGCAAAAAGCCGCCACCTTTTTCCCGGCGGAGGAACACAGCTCC AGATTCATCTCCCTCTCGCTTTCCTGCCTCCTCAAGATTTGCAGACATGCATTCGTTTGGGTTCCGAGCTAATGCGGTGCTGACCTTCGGGATCACCATC CTCGCGCTCATCTGCGCCATGGCTTCCGTCTCCGACAACTTCAATTCTCCCTCTCCGTCTGTCCAAATCCAGATATTGAACATCAATTGGTTCCAGAAAC AGCCTCATGGGAACGATGAGGTTTTTGTGTTCGTTGCTGCAGAGTATGAAACCTCAAAGAACGTATTGAACCAGGTCTCCCTTTGGGATGCAATCATACC ATCCAAAGACCATGCAAAGTTCTGGATTCAGACTGCAAACAAGTATCGATTCGTTGACCAGGGAAGCAACCTCCGGGGCAGAGAGTTCAACCTGACAATG CACTGGCATATCATGCCCAAGACTGGCAAAATGCTCGCCAACAAAATCGTCATGCCAGGATATCGCCTACCGGAAGAGTATAGATAG
AA sequence Show only first row Show all	>Lus10004463 pacid=23169700 polypeptide=Lus10004463 locus=Lus10004463.g ID=Lus10004463.BGIv1.0 annot-version=v1.0 MKFRHISQSRPKETSLKTSSVQFPANPQRSTPRKSLSYSLKSRSQRRRSPPPGKKPPPFSRRRNTAPDSSPSRFPASSRFADMHSFGFRANAVLTFGITI LALICAMASVSDNFNSPSPSVQIQILNINWFQKQPHGNDEVFVFVAAEYETSKNVLNQVSLWDAIIPSKDHAKFWIQTANKYRFVDQGSNLRGREFNLTM HWHIMPKTGKMLANKIVMPGYRLPEEYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	0	1
AT1G22520			Domain of unknown function (DU...		Lus10009454 [exp]	2.0	0.9297
AT4G00585			unknown protein		Lus10012175 [exp]	3.7	0.9240
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	3.7	0.9320
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	4.1	0.9364
AT1G79390			unknown protein		Lus10001759 [exp]	5.7	0.9108
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	8.8	0.9248
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	9.0	0.9312
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	10.9	0.9171
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	13.9	0.9205
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	15.0	0.9192

Compare expression of checked genes

Lus10004463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.