Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57450 243 / 1e-79 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT2G45280 59 / 8e-10 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT5G20850 50 / 1e-06 ATRAD51 RAS associated with diabetes protein 51 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029944 [exp] 129 / 2e-37 AT5G57450 110 / 1e-30 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10000790 [exp] 49 / 2e-06 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2) Lus10039383 [exp] 45 / 3e-05 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093100 [exp] 274 / 1e-91 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Potri.014G068100 [exp] 51 / 3e-07 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.006G135200 [exp] 48 / 4e-06 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10004464 pacid=23169718 polypeptide=Lus10004464 locus=Lus10004464.g ID=Lus10004464.BGIv1.0 annot-version=v1.0 ATGTCGCCGGAGAACCTTCTCCGCTTCCCGGAGTTGACGGAGAAGCTGACACTGGGTTCCCCGGAGATGGACCGCTGCCTCGGCGGCGGAATCCCCTGCG GATCGATCACCGAAATTGTAGCTGAGAGCGGCTCTGGAAAGACCCAACTCTGCCTACAGCTCGTCCTCCTCGCACAGCTTCCACCGTCGCTTGGCGGTCT CTCCGCCTCCTCCATCTACCTCCACTCGGAGTTCCCTTCCCCTACTCGCCGCCTACACCAGCTCGCCGTCCAATTCCATGCTCACCACCGTCAAGACCTC GTCGTGGGCCGTCAGTACGACCCGATGGACGGCGTGTTTGTGCAGAGTGTGCACACTGCAGACCAACTGCTCGACGAAATGTCCAGGACAGAGTCTTTCC TCCAGAACGCAAAACTCCATCTACCCGTGAGGATGATCGTGATCGACTCCATAGCGGCGCTGTTCAGGTCCGAGTTCGACAACACGGCTACCGATTTGAA GAAGAGGTCGTCGCTGTTCTTCAAGATATCCGGGGAGCTGAAAAGGCTGGCGTGGAGGTTTAAGTTGGTGGTGGTAGTGACTAATCAGGTTGTGGATTAT GTTGGAGATGGAGTGAATGGGGTGAAAGTTGGGAATCTGGGGTGTATGTATTCGTCTGGGAGGAGTGTTTTGCCTGCTTTAGGATTGGCTTGGTCGAATT GTGTGAACTCGAGGGTGTTCTTGTCCAGATCCGAGGCTGAGAAGGGGGGTGGGACTGAAGTTGGTGAAGGAAATGGTGGTCATGGGAGGACGAGACGGTG GCTTCATCTCGTTTTTGCGCCTCATTTGCCGCCTTCGTCTTGTGAGTTTGTGATAAGAAGAGAAGGAGTGTCTGGCATTGAGAGATGA
AA sequence Show only first row Show all	>Lus10004464 pacid=23169718 polypeptide=Lus10004464 locus=Lus10004464.g ID=Lus10004464.BGIv1.0 annot-version=v1.0 MSPENLLRFPELTEKLTLGSPEMDRCLGGGIPCGSITEIVAESGSGKTQLCLQLVLLAQLPPSLGGLSASSIYLHSEFPSPTRRLHQLAVQFHAHHRQDL VVGRQYDPMDGVFVQSVHTADQLLDEMSRTESFLQNAKLHLPVRMIVIDSIAALFRSEFDNTATDLKKRSSLFFKISGELKRLAWRFKLVVVVTNQVVDY VGDGVNGVKVGNLGCMYSSGRSVLPALGLAWSNCVNSRVFLSRSEAEKGGGTEVGEGNGGHGRTRRWLHLVFAPHLPPSSCEFVIRREGVSGIER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10004464 [exp]	0	1
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	3.2	0.7555
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	7.5	0.7169
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	8.5	0.6965
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	8.9	0.7298
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	22.2	0.6687
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	31.5	0.6930
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	40.2	0.6137
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	41.2	0.6928
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	41.7	0.6882
AT3G22430			unknown protein		Lus10021918 [exp]	42.2	0.6280

Compare expression of checked genes

Lus10004464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.