Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06130 113 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 112 / 2e-26 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 108 / 6e-25 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G27690 89 / 4e-19 Heavy metal transport/detoxification superfamily protein (.1) AT1G23000 84 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 74 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1) AT4G23882 71 / 2e-13 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 65 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1) AT1G56210 68 / 3e-12 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 64 / 4e-12 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029942 [exp] 211 / 2e-62 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031514 [exp] 135 / 6e-34 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10041228 [exp] 111 / 3e-26 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032445 [exp] 100 / 4e-23 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10031495 [exp] 82 / 2e-16 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 80 / 8e-16 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 69 / 2e-13 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 68 / 2e-13 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 67 / 5e-13 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036300 [exp] 113 / 1e-26 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.013G025300 [exp] 108 / 7e-25 AT3G06130 96 / 2e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G202800 [exp] 107 / 1e-24 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G128400 [exp] 101 / 6e-23 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 99 / 5e-22 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 92 / 2e-20 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 92 / 2e-20 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 91 / 3e-20 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G091700 [exp] 80 / 3e-16 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G026100 [exp] 78 / 1e-15 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10004465 pacid=23169683 polypeptide=Lus10004465 locus=Lus10004465.g ID=Lus10004465.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGGAAGCAGCAAGATGTTATGAAGATGCAGACTTGTGTTTTGAGGGTGAACATTCAGTGTCACTGTGATGGCTGCAAGTCCAAAATCAGGA AGCTGCTTCAGAAAATTAATGGGGTGTATTCAACCCAAGTGAATGCAGAGCAAGGGAAAGTGACTGTGACTGGAAACATCGATCCGTCAAAGCTGATAAA GAAGCTTGAGAGCTCCGGGAAACACGCTGAGATATGGGGCGGCGGAGCTGCAGCTGGAGGTGGAAAAGGGTCAAACAATTTCCAGAACATGGTCAGCGCT CAGTTCAAGAATATGCAGCAGATGCAGATGGAAGGTGGTGGGAAAGGGAACAACAAAGGAGGCCATCAAGTTCAGCAGCATCAGGTTGTTCATCAGCAGC AGTTCAAAGGGATGATGCCTAAGGATGTGAAGTTGCCGCCACAGCATAACAGCAAGGATATGAAGTCTGTGAAGCTCAACAACAATAAGAAGCATGAGTT GGATGAGGAAGATGATGATTATGATTTTGATGATGAGGATGATGACTTCGACGACGAGGATGATGATTTTGATGACGATGATGATGAATTTGATGATGAG GATGAAGATTTCGGTCATCATGGACATCAGGTTCCTCCTAACAAGATGATGATGATGCCTCCTAATAACAAGATGATGATGCCTCCTAATAAGATGCTGA TGCCTCCTAATAAGATGATGGGCCATGGAGGAGCTGCTATGGGGATGATGAACATGGCTCCCAAAGGCGGTGGAGGTGGCGGAGGAGGTGGTGGGAATGG GAAGAAAGGTGGTGGTGATGGAAAGAAGAACAAAGAAGGAGGAGGAGGTCAAAAGGAGGACAAAAAGGGTAAAAAGGGAAGTGATAAAAGCAGCAAAGGA GGAGGAATTGGAGGGTTGTTTGGGTTTGGGAAGAAGAAGAAGAGCAACAAGGAGATAGACCATGATGATGGTGGGGGTAAAAGTGTCAATCTTTCTGATT TTGGAAGTAGCAAGAGCAAGAACAAGAGCAAAAATGGTGGTGACCATGGAGGAGATGGAGGAGAAGATGGTTCAATCAAGGGTTTAGCTACAAACCAAAA CCATCAAAGCAATGGGGCCAACAAAAAGGGTGGAGGAGGCAAAGGTGGTGATGGGTCCCAACAACAAATGAAAAATCATGGAGGTGGTGGTGGGTTTGGT CATATTGGTCAACAAATGGGTGCTCCCCCACCAATGGCCAATTATGGAGGAGGAAGGATGAGTAACAACCCTTATCAACAAGGTATGGGACAACAAGGAG GCAATCCTTATCAACAACAATTGCAGCAGCAACAACAGCAGCAGCAGTATATGGAGATGATGATGATGATGAACCAGCAAAGGCAGCAGCTTCAACAACA ACAGCAGCAACAACAGCAATTTCATGGAGGGAATGATCAGATGTTCCAACATCATTCTATGATGTACAACGCCAACAGGCCGGTATACCCTCCCCAGGGA GGAGGCTACATGGGGGGCCCTCCACCTCCGATGCCTGGTCCGCATGTGTCGGATCCTTACTCTCACTTCCTCAGTGATGAGAATGCTAACAGTTGCAGTA TAATGTGA
AA sequence Show only first row Show all	>Lus10004465 pacid=23169683 polypeptide=Lus10004465 locus=Lus10004465.g ID=Lus10004465.BGIv1.0 annot-version=v1.0 MGKGKQQDVMKMQTCVLRVNIQCHCDGCKSKIRKLLQKINGVYSTQVNAEQGKVTVTGNIDPSKLIKKLESSGKHAEIWGGGAAAGGGKGSNNFQNMVSA QFKNMQQMQMEGGGKGNNKGGHQVQQHQVVHQQQFKGMMPKDVKLPPQHNSKDMKSVKLNNNKKHELDEEDDDYDFDDEDDDFDDEDDDFDDDDDEFDDE DEDFGHHGHQVPPNKMMMMPPNNKMMMPPNKMLMPPNKMMGHGGAAMGMMNMAPKGGGGGGGGGGNGKKGGGDGKKNKEGGGGQKEDKKGKKGSDKSSKG GGIGGLFGFGKKKKSNKEIDHDDGGGKSVNLSDFGSSKSKNKSKNGGDHGGDGGEDGSIKGLATNQNHQSNGANKKGGGGKGGDGSQQQMKNHGGGGGFG HIGQQMGAPPPMANYGGGRMSNNPYQQGMGQQGGNPYQQQLQQQQQQQQYMEMMMMMNQQRQQLQQQQQQQQQFHGGNDQMFQHHSMMYNANRPVYPPQG GGYMGGPPPPMPGPHVSDPYSHFLSDENANSCSIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	0	1
AT5G19090			Heavy metal transport/detoxifi...		Lus10029942 [exp]	1.4	0.7760
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	6.1	0.7769
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	6.7	0.6734
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	11.6	0.6903
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	15.4	0.6696
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	15.5	0.6509
AT3G02120			hydroxyproline-rich glycoprote...		Lus10032981 [exp]	23.0	0.6699
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	25.6	0.6641
AT1G73770			unknown protein		Lus10007968 [exp]	27.0	0.5804
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	29.3	0.6266

Compare expression of checked genes

Lus10004465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.