Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08980 525 / 0 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 375 / 2e-125 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 367 / 7e-122 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G25660 79 / 1e-15 Amidase family protein (.1) AT5G07360 72 / 4e-13 Amidase family protein (.1.2) AT5G64440 64 / 9e-11 ATFAAH fatty acid amide hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029941 [exp] 791 / 0 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10042001 [exp] 373 / 3e-124 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 367 / 7e-122 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 352 / 1e-115 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 350 / 2e-115 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10016685 [exp] 79 / 2e-15 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10020781 [exp] 77 / 1e-14 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 76 / 1e-14 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10043019 [exp] 73 / 2e-13 AT5G07360 858 / 0.0 Amidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024200 [exp] 590 / 0 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 579 / 0 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.012G046900 [exp] 401 / 2e-135 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 397 / 2e-133 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 369 / 7e-123 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.005G070300 [exp] 86 / 8e-18 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 86 / 1e-17 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 75 / 4e-14 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.001G285900 [exp] 73 / 1e-13 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.015G109400 [exp] 69 / 2e-12 AT5G07360 823 / 0.0 Amidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10004466 pacid=23169711 polypeptide=Lus10004466 locus=Lus10004466.g ID=Lus10004466.BGIv1.0 annot-version=v1.0 ATGGCAAAAAGCTCAGAAGACAATGGAGCTTTCATGGAGAAATTCGTGATAGAGCCGCCGCCGCCGAGTTCTTCAGATCATCAGCTCCCTCCTTTACAGG GTCTCACTTTTGCTGTCAAAGACATATTTGACGTGGCGGGATATGTGGCGGGGTTTGGCAGTCCTGATTGGGCAAGGACTCATTCAGCTGCAATTTCAAC TGCTCCAGCTGTGTTGGATGTCTTGAAGGATGGGGCTACCTTCGTCGGCAAAACCGTCATGGATGAAATGGCTTACAGCATTAACGGAGAGAACATACAC TATGGCACACCAGTGAATCCATGTGCTGCAGATCGGGTACCCGGTGGATCATCCAGTGGGTCAGCTGTAGCAGTTGGTGCTGCTCTTGTAGATTTCTCAT TAGGGACCGACACTGGTGGCAGTGTGAGAGTTCCTGCATCATACTGTGGAATCTTCGGGTTCCGACCTTCACATGATGCTGTTTCTAACTCTGGAGTCAT TCCCATGGCACAAAGCTTCGATACCGTCGGATGGTTTGCCAGGGATCCATCAATCTTCAAACGAGTTGGACAGTCTTTACTACATTTTCATGATCAGGAT GCTGTGGTCCCTAGCCAGGTGATTATAGCAGATGATTGCTTCCAGCTTTCGAGCATTCCACAAGACCGAGTCGCCAAAGTTCTCATCAACTCGGTCGATA AGCTTTATGGAGCAAATGTTGTCAAGCATGCAACGATTGGAGACTATGTTGAAGAAAAAGTTCCTAGCTTGCTGCATTTCATCAGTAAAGAAACCAAGAA TCAAGAACACAACATACCATCATTGGCAGCACTCTCGACCGCCATGCGCCTGCTCCAAAGGTTCGAATTCAAGAACAACCATGGTGAATGGGTTGGTAAA GTGAAGCCTGATCTGGGTCCAGGACTAGCTGAGAGGATATGGGAAGCAGTGCAAACACCAGTCGAACTCGAAAGCATAGATCACTGCCGATCTGTGAAAG CTGAACTACGAGACGCTCTTTCAGATCTTCTCGGGGACTCAGGGATCCTTGCCATCCCAACAGTTCCAGGGCCTCCACCGAAGCTGCAGACTGACTCGAG CACACTCGAAGGATTTCGAGCTAGGGCTTTCAGTCTACTGTCCATTGCTGGAGTGTCAGGATTCTGCCAGGTGAGCATACCACTAGGGATGCATGAAGAT CTCCCGGTATCGATCTCTTTGCTTGCGAAACACGGTCAGGACGGTTTCCTACTCGGTGTGGTTCAGAATCTTTATGAAACCATCAAAGAACATGCTCATC AAGTTGTTCTGAACTAG
AA sequence Show only first row Show all	>Lus10004466 pacid=23169711 polypeptide=Lus10004466 locus=Lus10004466.g ID=Lus10004466.BGIv1.0 annot-version=v1.0 MAKSSEDNGAFMEKFVIEPPPPSSSDHQLPPLQGLTFAVKDIFDVAGYVAGFGSPDWARTHSAAISTAPAVLDVLKDGATFVGKTVMDEMAYSINGENIH YGTPVNPCAADRVPGGSSSGSAVAVGAALVDFSLGTDTGGSVRVPASYCGIFGFRPSHDAVSNSGVIPMAQSFDTVGWFARDPSIFKRVGQSLLHFHDQD AVVPSQVIIADDCFQLSSIPQDRVAKVLINSVDKLYGANVVKHATIGDYVEEKVPSLLHFISKETKNQEHNIPSLAALSTAMRLLQRFEFKNNHGEWVGK VKPDLGPGLAERIWEAVQTPVELESIDHCRSVKAELRDALSDLLGDSGILAIPTVPGPPPKLQTDSSTLEGFRARAFSLLSIAGVSGFCQVSIPLGMHED LPVSISLLAKHGQDGFLLGVVQNLYETIKEHAHQVVLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	0	1
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	1.4	0.8754
AT5G08400			Protein of unknown function (D...		Lus10009625 [exp]	1.7	0.8724
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	3.0	0.8955
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	3.9	0.8679
AT5G57910			unknown protein		Lus10022161 [exp]	4.2	0.8611
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	4.5	0.8683
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	5.3	0.8555
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	5.7	0.8549
AT3G05000			Transport protein particle (TR...		Lus10018981 [exp]	6.6	0.8431
AT1G70100			unknown protein		Lus10010725 [exp]	6.9	0.8425

Compare expression of checked genes

Lus10004466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.