Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05250 286 / 6e-97 RING/U-box superfamily protein (.1) AT3G05670 42 / 0.0003 RING/U-box protein (.1) AT4G10940 41 / 0.0003 RING/U-box protein (.1) AT4G28270 40 / 0.0005 ATRMA2 RING membrane-anchor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029940 [exp] 396 / 7e-141 AT3G05250 227 / 3e-74 RING/U-box superfamily protein (.1) Lus10010911 [exp] 165 / 8e-49 AT3G05250 118 / 4e-31 RING/U-box superfamily protein (.1) Lus10034165 [exp] 54 / 6e-08 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10031468 [exp] 44 / 8e-05 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10015213 [exp] 44 / 0.0001 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10012062 [exp] 43 / 0.0002 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10027921 [exp] 42 / 0.0002 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10039821 [exp] 42 / 0.0004 AT4G03510 154 / 2e-46 RING membrane-anchor 1 (.1.2) Lus10034088 [exp] 42 / 0.0004 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035600 [exp] 343 / 2e-119 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1) Potri.008G215200 [exp] 50 / 9e-07 AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1) Potri.005G021000 [exp] 49 / 3e-06 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 45 / 3e-05 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.001G089900 [exp] 44 / 0.0001 AT4G10930 506 / 5e-160 unknown protein Potri.004G143900 [exp] 43 / 0.0001 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1) Potri.019G100800 [exp] 42 / 0.0002 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.001G401600 [exp] 41 / 0.0005 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.006G193600 [exp] 41 / 0.0008 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10004467 pacid=23169712 polypeptide=Lus10004467 locus=Lus10004467.g ID=Lus10004467.BGIv1.0 annot-version=v1.0 ATGGAGGACGAGAAGACTTCTTCATCTTCGACTTCACAGGACGCAAGCGGCGGCCATTGTTGCCCTATCTGCTTGGGGTCGTTCATCCAAGAGTCGTATC TCGATACCTGTTTCCACAAGTTCTGTTTCAAATGCATCTTGCAGTGGTCTAAAGTGGTGGCTGGGAAGCATTCTGCAGCCCAGTCTTCAGTGAAATGCCC TTTGTGCAAGACAGAAAATGCATCGGTCATCCATGGATATGATGGAGCTTCGTTCCTTAGGCATTACATAAGTTCCGGAACTGAGGACTCGACGTTCTTC ACCAAAGAGCACAAGTATAGATTACAAAGTTATTACACTGAACCAGGTGTTCTGAGTGAGGCAGTCAACATTCAGCGGTTTTGGAAGTCGAATAAGTATC TCCAGCCAAATCACTGGCTCCAACGTTGGTTAACTAGAGAAATCCAGGCTCTTATTCAGGTAGAAGATGTTGATGTCATTGTTCATCATATCCTAGGTGT GATTGAATCTTTCTTAAGAAGAGACGATCAATCTCAGTACAAGAAACCACCAGAAGCAAAGCAGCAGGAGTTCAAAGCTCTGGTAGCAGATGCAGCAAGG CCTTTCGTAGCAGCAAGAACAGCGCGATTCGTAGATGAATTGGAATTCTTTCTTGCGTCGGGATTGAATGTTAATGGGTACGATGAAGTCTACACACAAC AATTGGGCTGGAACATCCCTGGAATCAGCAGGATGATTCGAGAAAAAGAAGACTACGGACACGTTGAATCGGATGAGCACATAACACCAGCTGCAGTTCC ATTGCTGTACATTTCAGATGCGGATTGTGATGAAGCTGTTTGA
AA sequence Show only first row Show all	>Lus10004467 pacid=23169712 polypeptide=Lus10004467 locus=Lus10004467.g ID=Lus10004467.BGIv1.0 annot-version=v1.0 MEDEKTSSSSTSQDASGGHCCPICLGSFIQESYLDTCFHKFCFKCILQWSKVVAGKHSAAQSSVKCPLCKTENASVIHGYDGASFLRHYISSGTEDSTFF TKEHKYRLQSYYTEPGVLSEAVNIQRFWKSNKYLQPNHWLQRWLTREIQALIQVEDVDVIVHHILGVIESFLRRDDQSQYKKPPEAKQQEFKALVADAAR PFVAARTARFVDELEFFLASGLNVNGYDEVYTQQLGWNIPGISRMIREKEDYGHVESDEHITPAAVPLLYISDADCDEAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05250			RING/U-box superfamily protein...		Lus10004467 [exp]	0	1
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	8.9	0.7508
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10038886 [exp]	14.3	0.7233
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	26.9	0.6842
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	29.7	0.7404
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	38.6	0.7139
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	41.0	0.6982
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	58.5	0.6857
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	65.9	0.6795
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	68.0	0.6903
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027916 [exp]	68.4	0.6574

Compare expression of checked genes

Lus10004467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.