Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08970 233 / 4e-77 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G54830 224 / 1e-73 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT5G63470 209 / 2e-67 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT3G48590 206 / 1e-66 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT1G56170 198 / 7e-64 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT5G50480 139 / 8e-41 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 124 / 5e-35 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1) AT5G50490 112 / 2e-30 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50470 109 / 3e-29 CCAAT NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1) AT5G38140 98 / 6e-25 CCAAT NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029939 [exp] 404 / 4e-144 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 224 / 2e-73 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 223 / 3e-73 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10016750 [exp] 199 / 3e-63 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 191 / 5e-60 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10024515 [exp] 116 / 1e-32 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 111 / 8e-31 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10026780 [exp] 59 / 5e-10 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10030832 [exp] 56 / 1e-09 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035800 [exp] 261 / 1e-87 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 251 / 3e-84 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 251 / 9e-84 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.008G203500 [exp] 245 / 2e-81 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G094900 [exp] 212 / 2e-68 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.007G070900 [exp] 210 / 1e-67 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.015G097400 [exp] 203 / 3e-65 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 187 / 5e-59 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.003G124500 [exp] 114 / 4e-32 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.017G120000 [exp] 115 / 1e-31 AT1G56170 127 / 1e-36 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10004468 pacid=23169719 polypeptide=Lus10004468 locus=Lus10004468.g ID=Lus10004468.BGIv1.0 annot-version=v1.0 ATGGATCACCACCAACAAGGGCACGGAGGACAGTCTCCAGCTACAGGAGTCACTTCCGGCGCTGCTCAGATGTCCTACCCTTACAATCCGAACCAAATGC AAGTTCCACAAAGCAGCGGAGGACCGGCCACGAGTCAGCACCAAATCGCCTACCAGCAAATCTACAATCAACAGCAGCAGCAGCTGCATCAACAGCTCCA GTCGTTCTGGGCTAACCAGTACCAAGAGATCGAGAAAGTCACCGACTTCAAGAACCACAGCCTCCCTTTAGCAAGGATCAAGAAGATCATGAAGGCCGAC GAAGACGTGAGGATGATCTCGGCCGAGGCCCCTGTCGTGTTTGCCAGGGCCTGCGAGATGTTCATCCTCGAACTGACCCTTCGTGCGTGGAACCACACGG AGGAGAACAAGAGGAGGACCCTGCAGAAGAACGACATCGCTGCGGCCATCACGAGGACCGACATTTTCGACTTTTTGGTAGACATTGTGCCCCGCGAGGA TTTGAAAGATGAGGTCCTGGCTTCGATCCCGCGTGGGGGAATGCCCGGAGGAGGAGGGAGTTCCGATGCGATGAATTACTGGCCTCATCAGCAGCAGCAG GTGGGGGGGAGTCCTGGGATGATCATGGGGAAGCCGGTTATGGATCCTTCGTCCATGTATGCTCAGCAGCAGGGCATGGCTTCTTACATGGGGCAACCTA TGTGGCCGCAGCAGCAAGGGTCGGACCAGCAGCAGCCTCAATCGTCTTCCGAGCATCAGTAA
AA sequence Show only first row Show all	>Lus10004468 pacid=23169719 polypeptide=Lus10004468 locus=Lus10004468.g ID=Lus10004468.BGIv1.0 annot-version=v1.0 MDHHQQGHGGQSPATGVTSGAAQMSYPYNPNQMQVPQSSGGPATSQHQIAYQQIYNQQQQQLHQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKAD EDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGGMPGGGGSSDAMNYWPHQQQQ VGGSPGMIMGKPVMDPSSMYAQQQGMASYMGQPMWPQQQGSDQQQPQSSSEHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	0	1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	1.0	0.9242
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	1.7	0.9092
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	2.0	0.9132
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	2.0	0.9067
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	2.6	0.8920
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	3.2	0.8954
AT1G02070			unknown protein		Lus10009267 [exp]	3.5	0.8945
AT1G29530			unknown protein		Lus10025373 [exp]	3.6	0.8758
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	5.2	0.8825
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	6.0	0.8619

Compare expression of checked genes

Lus10004468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.