Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08960 542 / 0 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) AT5G17860 154 / 2e-40 CAX7 calcium exchanger 7 (.1) AT1G54115 127 / 6e-31 ATCCX4 cation calcium exchanger 4 (.1) AT5G17850 121 / 5e-29 Sodium/calcium exchanger family protein (.1) AT3G14070 119 / 3e-28 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029938 [exp] 798 / 0 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Lus10013635 [exp] 156 / 6e-41 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10001330 [exp] 155 / 2e-40 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10001329 [exp] 145 / 4e-37 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10013634 [exp] 142 / 3e-36 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10037681 [exp] 137 / 2e-34 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10015668 [exp] 134 / 2e-34 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10037682 [exp] 135 / 6e-33 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10020318 [exp] 100 / 5e-22 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025100 [exp] 591 / 0 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Potri.013G065900 [exp] 153 / 7e-40 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 152 / 2e-39 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 147 / 1e-37 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 111 / 2e-25 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 106 / 6e-24 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.019G040301 [exp] 97 / 3e-21 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10004469 pacid=23169686 polypeptide=Lus10004469 locus=Lus10004469.g ID=Lus10004469.BGIv1.0 annot-version=v1.0 ATGGCATTCCCTTCTCTCAAATTCCCACTGCCATCTCCAATCCTCAGCTCCACAGCAGCAATCTCACTAACCCTCATCACTTCACTACTCGCCGCACTCA CCACCGAAACCCCCCACCGTACAAATCGAAGATCCCTAATTTCACAGACCCCCAACATTTCTTGCGCAACTCTCCCGCCTTCAAATGGAATCATCAACTA CCTCTCGATCCACTTCTGCTTATTCAATTCCAACTCTTTCCTCTCCGTCCTGTCGCTCTCGCTCTTCATCCTCTTCCAATTCTACATCCTCATCAAAACC GCGCAATCCCACTTCTCCGTCGTCACCACAAAGCTGGCGACTCACCTGAATCTGTCGCCGAGCATGGGTGGAGTGACGCTTTTAGCCCTGGGAAATGGAG CTCCCGACGTGTTTGCGTCTCTTGCTGCAGTAAGGTCCGGACAGTACAGGACTGGATTCGGAGCCATACTCTCTGCGGGGGCATTTGTTTCCGCGTTTGT GGTGGGCTTCGTGGCGATCTATGCGGCGCCGTTTAGTGTGGATCCCGGTTCGTTCGCGAGGGACGTCGGGTTTTACTTGGTTGCGGCTATGTCGTTGTTT TATGTCTATCTGAGTGGGGAGATCACGTTCTGGCAGGCTGCTGGGTTTGTTGGGTTCTATGTGTTCTTCGTTGGGATTGTGTTTTGGATGGATTTGGGGA TTAAGGGTAGAAGTAAAGGTCGTAGAGGTAGAGGCTATTATGATGCAGAGCTGATGATGGATTTTGAAAAGGTGGATGTTGAAAGGTTGAAGGCTAGCAA GGAAGAAGAGAGAGCTGCTGGATTGCTTGAAAGGGCTTTTGGAAGCTTGAAGCTTCATAGAAAGGAGGAGAAGAGCTCTGGGTTTCTTGCAAAGATTTCG AAAATCTGGGAGGTCCCTGTCATGTTGCTTCTAAACCTCACAATTCCGCAAACAGCACCATCGGAATGGAACAGGCTCTACCAATCAGCCAACATCGTTC TTTGCCCTCTGGCTCTCCTATATGCATGCAGCTCAATCATGCCCTTAAACCATCCCATCGCCTTCCTCCTCTCAACAACCCATTTCCCACTCTGGTTCGT CACCCTCCTGGCCGGCTCCTCCCTCGCACTGCTCCATTTCATACTCGAAAGAGAACCCCCAAAAACCGAACAACTCCATGTGGTACTTCTGGCATTCGTA ATGAGCGTCTTTTGGATATCCACCACCGCTGGAGAACTCCTCAACTGCCTGGCAGCACTCGGCACCATCCTCGAGGTCGCTCCGTCACTTCTGGGGCTGA CGGTGCTTGCGTGGGGGAACTCGGTAGGCGATCTCGTTGCTGATGTTGCGGTCGCCAAGGCCGGACAGCCAGCCATGGCAATGGCCGGTTGCTTTGCCGG ACCGATGTTTAACATGCTTGTGGGGCTCGGATCGGCTCTGATGGTGCAAACGGCTAACGTCTATCCGGATGCTTACGAACTCAACTTCCACATAAGTATC ATAGTTGCTTTTGTTTTCTTGCTTCTGAGCCTGATGGGTTCTCTACTCGTCGTTACGTGGTCCAGGTTTCGGGTCCCCAAGTTCTGGGGGTTCTGCCTGG TCGGCCTTTATGCTTTTTTCATGGTGGTAAGCTTGCTCGTTGCGACATTATTCATATGA
AA sequence Show only first row Show all	>Lus10004469 pacid=23169686 polypeptide=Lus10004469 locus=Lus10004469.g ID=Lus10004469.BGIv1.0 annot-version=v1.0 MAFPSLKFPLPSPILSSTAAISLTLITSLLAALTTETPHRTNRRSLISQTPNISCATLPPSNGIINYLSIHFCLFNSNSFLSVLSLSLFILFQFYILIKT AQSHFSVVTTKLATHLNLSPSMGGVTLLALGNGAPDVFASLAAVRSGQYRTGFGAILSAGAFVSAFVVGFVAIYAAPFSVDPGSFARDVGFYLVAAMSLF YVYLSGEITFWQAAGFVGFYVFFVGIVFWMDLGIKGRSKGRRGRGYYDAELMMDFEKVDVERLKASKEEERAAGLLERAFGSLKLHRKEEKSSGFLAKIS KIWEVPVMLLLNLTIPQTAPSEWNRLYQSANIVLCPLALLYACSSIMPLNHPIAFLLSTTHFPLWFVTLLAGSSLALLHFILEREPPKTEQLHVVLLAFV MSVFWISTTAGELLNCLAALGTILEVAPSLLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLVGLGSALMVQTANVYPDAYELNFHISI IVAFVFLLLSLMGSLLVVTWSRFRVPKFWGFCLVGLYAFFMVVSLLVATLFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	0	1
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	1.0	0.9223
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	2.4	0.9079
					Lus10016421 [exp]	2.8	0.8792
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	3.9	0.9069
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	4.0	0.9027
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	5.5	0.8662
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	5.9	0.8799
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	6.3	0.8749
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	7.4	0.8968
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	7.7	0.8710

Compare expression of checked genes

Lus10004469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.