Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54860 183 / 6e-59 Glycoprotein membrane precursor GPI-anchored (.1) AT3G06035 152 / 1e-46 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19250 137 / 6e-41 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19240 102 / 2e-27 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19230 91 / 9e-23 Glycoprotein membrane precursor GPI-anchored (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029938 [exp] 332 / 6e-110 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1) Lus10034054 [exp] 140 / 4e-42 AT3G06035 220 / 2e-73 Glycoprotein membrane precursor GPI-anchored (.1) Lus10010516 [exp] 140 / 9e-42 AT3G06035 226 / 9e-76 Glycoprotein membrane precursor GPI-anchored (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G034400 [exp] 214 / 3e-71 AT1G54860 167 / 6e-53 Glycoprotein membrane precursor GPI-anchored (.1) Potri.008G195000 [exp] 145 / 3e-44 AT3G06035 231 / 2e-77 Glycoprotein membrane precursor GPI-anchored (.1) Potri.010G033400 [exp] 145 / 7e-44 AT3G06035 214 / 4e-71 Glycoprotein membrane precursor GPI-anchored (.1) Potri.013G023801 [exp] 141 / 3e-43 AT1G54860 102 / 4e-28 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034300 [exp] 110 / 2e-30 AT1G54860 99 / 5e-26 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034200 [exp] 104 / 4e-28 AT1G54860 110 / 2e-30 Glycoprotein membrane precursor GPI-anchored (.1) Potri.013G023701 [exp] 64 / 2e-13 AT1G54860 62 / 8e-13 Glycoprotein membrane precursor GPI-anchored (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004470 pacid=23169716 polypeptide=Lus10004470 locus=Lus10004470.g ID=Lus10004470.BGIv1.0 annot-version=v1.0 ATGAATGACTTTAAATCGGCCTTCTTACTCTGGTTTGTCCTTCAAGCCCTGATCTTGCTTCCTTCCTCTGTGCATTCCAAAGATGAGGATGAGGATAACC TTCTGCAAGGGCTGAACAGCTACAGGCAGTCACAGAGCCTTCCGATCCTTGCCAAGCACGAGAAGGCAGGGTGCCTCGCCGACAGGGTGGCCAACAAGCT AGAGGACCAGCCATGTCCGGCCTCTGGAAGGGCCACAGCCCCGGTTGTCCAGCTCAGCGACTATCCGGACGCGATGGACAAGTGTGGAGTCGACATTAAC AAGACCAGGGAAGGTGTCGTGTTGCCGGTCTGTGTAAGGAAGCTGGTCCCGACCTTGGTCCTGACGAACTATACGCAGACTCAGTACGCGAGGTACCTCA ATGACTCGCGGTTCGTGGCTGCAGGGCTTGGTTCGGAGGATGACTGGATGGTGGTTGTGTTGACGACGGGGACTCCTGGTGGGAGCTTTGCTGGAGCGAG TCGGTTGGTGGCTGGGCTCAGTGGCGTCATGTTGTTGGTGGTGTCGTTGCTGGTTGGGGTGTTGGTTTGGTTTGTTTGA
AA sequence Show only first row Show all	>Lus10004470 pacid=23169716 polypeptide=Lus10004470 locus=Lus10004470.g ID=Lus10004470.BGIv1.0 annot-version=v1.0 MNDFKSAFLLWFVLQALILLPSSVHSKDEDEDNLLQGLNSYRQSQSLPILAKHEKAGCLADRVANKLEDQPCPASGRATAPVVQLSDYPDAMDKCGVDIN KTREGVVLPVCVRKLVPTLVLTNYTQTQYARYLNDSRFVAAGLGSEDDWMVVVLTTGTPGGSFAGASRLVAGLSGVMLLVVSLLVGVLVWFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54860			Glycoprotein membrane precurso...		Lus10004470 [exp]	0	1
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	3.3	0.9328
					Lus10038080 [exp]	8.1	0.8855
					Lus10033211 [exp]	8.7	0.8469
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033516 [exp]	12.4	0.8317
					Lus10036765 [exp]	12.6	0.8807
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	14.6	0.8807
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006923 [exp]	16.0	0.7389
AT2G16190			unknown protein		Lus10011284 [exp]	16.3	0.8807
AT5G51105			Protein of unknown function (D...		Lus10019549 [exp]	17.5	0.7810
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	17.8	0.8807

Compare expression of checked genes

Lus10004470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.