Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54920 271 / 7e-78 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029936 [exp] 1292 / 0 AT1G54920 296 / 3e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G034100 [exp] 395 / 2e-122 AT1G54920 332 / 5e-99 unknown protein Potri.013G023600 [exp] 394 / 6e-122 AT1G54920 341 / 5e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004472 pacid=23169705 polypeptide=Lus10004472 locus=Lus10004472.g ID=Lus10004472.BGIv1.0 annot-version=v1.0 ATGGCCCCGAATTTCGTCCAAGACGATAATTGGGGCGATTTCATTTACTCCTCCGGCGCCGGCGGATTCTCTCACGCAGCATCGTCTCTCTCTATACCTT CGGACCTGTTTCTTACTCCCGTGGCGGGAAAGAAGGACGAGGTGACGCAGAAGAAGCCGCTGGACACGAAGCCTTCAGGAGCTTTCCCGCTTTCTCTGTT TGGAGAAATGGAGGAAGCAGCTGAAGAAGAATCGGGTGCTGGATTGATGAATTCGGATCTGGTGAAAAGGAATGCGGTGGTTAATATAGACGTGAATGAT CTGATTGCCGATTTGTATAAACCCAGTGGGGACTCGAAGCCAAATGGATCGGCAAGGGAAGGAAGAAATGGAGTTGGTTCGAAGTCGGTTGGATTCGATT CGAGTTGGAGCTGGGGGCATACCTCTGGATTTGGAAATGGCTTGATTGCTAATGGTACAAATGGAGCGACATCTGAATCACGGGGACAAGGTTTGGACTT TGATCCGTTGAATCTGATTTCCAATGGATCGAATTTGAACGGCAACATGTCTGGTTCGGATCTGCAAGGGTCGAATTTGAATTCAAATTCAAATGTAGTG AATGGTAATGAGGGTTTCGATGACGAGGAAGATGATGACGGATGGGAATTCAAGGCCGCTGAATCCAAAGTGGAAGAGGTTGCTAAGCAACCAGAGCAAA TGACGAATCAGAATGGGCTGACTTTCAATCCGAATGAACTTTACTCTAGCTGGAATGGTGCTAATTTGGACTTCTCCGGATGGAGTACTAGTTCCAATGG TGTCGAGCGGAGTAGCAATTCGATGAATGATGGCTCAGTTGGTGAAAGGGAAGACCTTCCCGCGAGTGATACATGGGGGTTTGTTGTTACAGGTTCTAAT GGTGGCCCGGTTGACGAAATAAAGAAGATTGATAAAACTACTGAGGATGTTTCAAAGGCAAATTTCGACAGCTCCAGCTTAAGCTTAAGTGTATTGAACT CAAATGTGGTAAAAGCGGATCCTGGATTTTTGGATGAGAATGATGAGTTTAGTGATGTGGATGGTTGGGCCTCCAAGGACGCAGAATCAGACTTGCAAGA TACCCAGGTGAAGATGGAAGATGACCTGAAAATTCAATCTAGTCCTGCTGATTCAAGTGTTAAAATTTCCAACTTGGGTGGTGCTGGTGTGAATTTGGAT TTGTTTGCTGCTGATTGGGATACAAGAGAAGGGACTTCAGATATGACGCAGTCGGATCACAATTTATCGACTGAAACTGAGGATCCTGATGGTGACGATG ACTGGGAGTTCAAGATCGCAGGATTTCCCATTGATTCAAGCAGCAAGGTTCATGACTTAACTCATAGCCGGAGTACAGGAGCACTTCCTCTGTCACTTTT TGGGGAAGAAGAAAAAGATGCCAATGATCTCGCATTACACCAAGTCAGTTCGGCTCGGATCTCAAGAAATGATAATAGGGGTATTAGTTCCAGTCTCTCT ATCAACGATCTGATATCAAGTCTGTACAATGAAGTTGAGCAAACTGCTCCCCCCAGTCACTTGCAAACTGCATTGGCTTCCACTGCATCAAATGGCACTG AAGTGTTGGATGATGATTCCTGGGAGTTCAAAGATGCTTCTTCTATTACAGAAGACTCCACAATATGGTCCAGTCACATAGAGCTACCAGATTGGCTAGA CTTGTTTTCCAAATTGAAGGAAAAATTATGTCTGATTGCATATCAACATCTTGAAAATATTAAGCGAACTCGTGAAACTGCTGCTCTTACTGGCGAGGAT ACCGATCTCAGTGTCTTGGATAGGGAAATACAGGACCTGCATGATGAACTCAGTAACATTGTGGAAGAAGTTCATTCAGAAGATCACTTGCAACGTGACG TACGACTCAGTGAGTTGTTTGAAGTGTTGCAGCAACCGAAGTTTCAAGCTATCGAGTCAGAATATCAACTATTAGAAAAGCTATCGTTGGTTCAGAACGA CTCAAACTCGACAGTCCAACTTCTGAAGAAGGTGTTCTCGGTGTTGAAGATTTTGACTTTAGTATCTAGACAGGAACAAACCAGTTATATCTCCACCTGG TCTAAGATACTCTCTCTATGTGCTGAAGAGCTGCGACACGGGTCGATGATTTGGAAGCAGTTGGTACAAGAAAATATCCAGGAACAAGTTCTATCCAGGG TTGAAGGAAAGAGGTATATCCTCGCAATTGGAGAGATTTACAGACTCGTTGAAGTTCTTCGATGCACGGCCAGGCTTTACAGGCCATGGATATTGTTGAT GGGACCTGCTGATTCCGCGAGATTCAATACTGTGATGAGCGAGTGTTGTAACATGTGGCCAAGTTCAGGACTTGAAGAAGCTCTGCTAAGCTTTTCTGAT GGCTCTACCGTATTGGATTCAGTTGCATACCTTCGTAATCTCGAGGATGCTACAATTTACGAGATTGTTTTCTCTGGACAAGGCCCAATCTGTCAGCTCT CGGCTCTTAATCAAGGAGTAGTTCCAGGGATGGATCTCGTGGCATGGAATGACGCTCACTACTTTGTCAAGTTCGCAAACCTGTGGACTAACTTGACGGG TTCTTACCCGCCTAGTCTGTCTCACTTACACCTCCATGATGATGTTTAA
AA sequence Show only first row Show all	>Lus10004472 pacid=23169705 polypeptide=Lus10004472 locus=Lus10004472.g ID=Lus10004472.BGIv1.0 annot-version=v1.0 MAPNFVQDDNWGDFIYSSGAGGFSHAASSLSIPSDLFLTPVAGKKDEVTQKKPLDTKPSGAFPLSLFGEMEEAAEEESGAGLMNSDLVKRNAVVNIDVND LIADLYKPSGDSKPNGSAREGRNGVGSKSVGFDSSWSWGHTSGFGNGLIANGTNGATSESRGQGLDFDPLNLISNGSNLNGNMSGSDLQGSNLNSNSNVV NGNEGFDDEEDDDGWEFKAAESKVEEVAKQPEQMTNQNGLTFNPNELYSSWNGANLDFSGWSTSSNGVERSSNSMNDGSVGEREDLPASDTWGFVVTGSN GGPVDEIKKIDKTTEDVSKANFDSSSLSLSVLNSNVVKADPGFLDENDEFSDVDGWASKDAESDLQDTQVKMEDDLKIQSSPADSSVKISNLGGAGVNLD LFAADWDTREGTSDMTQSDHNLSTETEDPDGDDDWEFKIAGFPIDSSSKVHDLTHSRSTGALPLSLFGEEEKDANDLALHQVSSARISRNDNRGISSSLS INDLISSLYNEVEQTAPPSHLQTALASTASNGTEVLDDDSWEFKDASSITEDSTIWSSHIELPDWLDLFSKLKEKLCLIAYQHLENIKRTRETAALTGED TDLSVLDREIQDLHDELSNIVEEVHSEDHLQRDVRLSELFEVLQQPKFQAIESEYQLLEKLSLVQNDSNSTVQLLKKVFSVLKILTLVSRQEQTSYISTW SKILSLCAEELRHGSMIWKQLVQENIQEQVLSRVEGKRYILAIGEIYRLVEVLRCTARLYRPWILLMGPADSARFNTVMSECCNMWPSSGLEEALLSFSD GSTVLDSVAYLRNLEDATIYEIVFSGQGPICQLSALNQGVVPGMDLVAWNDAHYFVKFANLWTNLTGSYPPSLSHLHLHDDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54920			unknown protein		Lus10004472 [exp]	0	1
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10018897 [exp]	2.8	0.8971
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	4.9	0.8623
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	8.1	0.8968
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	13.7	0.8880
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	15.5	0.8602
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	15.7	0.8701
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	18.6	0.8774
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10003539 [exp]	22.5	0.8593
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	23.7	0.8838
AT3G11240		ATATE2, ATE2	arginine-tRNA protein transfer...		Lus10040189 [exp]	24.7	0.8176

Compare expression of checked genes

Lus10004472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.