Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27490 446 / 7e-160 Integral membrane Yip1 family protein (.1) AT3G05280 403 / 6e-143 Integral membrane Yip1 family protein (.1) AT2G39805 182 / 2e-56 Integral membrane Yip1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029935 [exp] 531 / 0 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1) Lus10015189 [exp] 489 / 6e-177 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1) Lus10031511 [exp] 486 / 5e-176 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1) Lus10004695 [exp] 163 / 5e-49 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2) Lus10001020 [exp] 153 / 2e-44 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2) Lus10030159 [exp] 118 / 2e-31 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033900 [exp] 460 / 1e-165 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 434 / 4e-155 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1) Potri.008G060300 [exp] 184 / 4e-57 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2) Potri.010G198300 [exp] 180 / 2e-55 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10004473 pacid=23169681 polypeptide=Lus10004473 locus=Lus10004473.g ID=Lus10004473.BGIv1.0 annot-version=v1.0 ATGATGTCCGGAAACTACACCCACATTGACAACCAGAAAGTATCTGGATCTGTACCCGCAGTTACTGATCAGGCCCACGTTCCCGTTCAGTTCGCAGAGT CAAATCTGCAAACTTTTCCTCCTTCTGGCGCTCAGGGGAAGATCAGTGGTGGATCCAGGCCTCCCCGTGATTCTGACGATTCGTTTTCAAAACCAGTCAA TGGTACTGATGAACCGCAGCAGCAAGGTGGTTGGCTTCGGGCATTCTCAATTGCTGCATACAAGCCATACTTTGACGTTGATACTTTTGATGTTCTAGAG AGAATCAAAGATTCACTCTTTCCGTTCAATGGATCCTTTAACGAGAAAACAACAAACAACCCGGACTTGTACGGACCCTTCTGGATATGCACCACGTTAA TCTTTGTAGCAGCATCGATCGGAACTGTCGTGACATACATAGCGCACAAGCTTCACAATAAAGAATGGAACTACGACATAAACGTTGTTACCTGGTCTGC CGGATTATTCTACGGATACGTAACTATAGTCCCTCTCGTTCTATACGTGATCCTCAAGTACTTCTCGGCACCATCGGGTCTTGTACAGCTCTTCTGTCTG TACGGTTACTCCCTGTTCATCTTCATCCCAACTCTGTGTCTCTCAGTTGTTCCCTTGGAGATCTTCAGATGGGTAGTTGCAGGTGTGGCGGGGTTTATGT CGGCATCCTTTGTCGCGCTGAACCTCCGAGCTCATATAATGTCAGCAGGCGAAAGATGGTTCTTGATCGTCGCTGGGATCTTTGTGCTGCAGCTAGCGCT GTCGGTTGTGTTGAAGATGTATCTATTTACTATTACTGTATAA
AA sequence Show only first row Show all	>Lus10004473 pacid=23169681 polypeptide=Lus10004473 locus=Lus10004473.g ID=Lus10004473.BGIv1.0 annot-version=v1.0 MMSGNYTHIDNQKVSGSVPAVTDQAHVPVQFAESNLQTFPPSGAQGKISGGSRPPRDSDDSFSKPVNGTDEPQQQGGWLRAFSIAAYKPYFDVDTFDVLE RIKDSLFPFNGSFNEKTTNNPDLYGPFWICTTLIFVAASIGTVVTYIAHKLHNKEWNYDINVVTWSAGLFYGYVTIVPLVLYVILKYFSAPSGLVQLFCL YGYSLFIFIPTLCLSVVPLEIFRWVVAGVAGFMSASFVALNLRAHIMSAGERWFLIVAGIFVLQLALSVVLKMYLFTITV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	0	1
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	1.0	0.8543
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	2.4	0.8174
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	3.2	0.8088
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	4.5	0.7766
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	5.5	0.8172
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10011583 [exp]	6.7	0.7796
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	7.2	0.8089
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	7.7	0.8048
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	9.7	0.7631
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	19.4	0.7559

Compare expression of checked genes

Lus10004473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.