Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27540 947 / 0 MIRO1, EMB2473 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) AT3G63150 761 / 0 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) AT3G05310 689 / 0 MIRO3 MIRO-related GTP-ase 3 (.1) AT4G35020 65 / 7e-12 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT2G44690 61 / 3e-10 ARAC9, AtROP8, ROP8 RHO-RELATED PROTEIN FROM PLANTS 8, Arabidopsis RAC-like 9 (.1) AT1G20090 60 / 5e-10 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT3G51300 59 / 8e-10 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT1G75840 59 / 8e-10 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT4G35950 59 / 8e-10 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT4G28950 58 / 2e-09 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029934 [exp] 1180 / 0 AT5G27540 971 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10031508 [exp] 1075 / 0 AT5G27540 951 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10015186 [exp] 1068 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10022034 [exp] 805 / 0 AT3G63150 891 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10042575 [exp] 800 / 0 AT3G63150 892 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10034538 [exp] 64 / 3e-11 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 61 / 4e-10 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10033131 [exp] 60 / 5e-10 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10002181 [exp] 60 / 6e-10 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023100 [exp] 1075 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.005G033700 [exp] 1043 / 0 AT5G27540 937 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.005G209000 [exp] 843 / 0 AT3G63150 847 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Potri.009G134600 [exp] 62 / 7e-11 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 60 / 5e-10 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.014G051800 [exp] 60 / 5e-10 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.015G073000 [exp] 59 / 1e-09 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.002G019500 [exp] 58 / 3e-09 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.007G061500 [exp] 58 / 3e-09 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.005G110700 [exp] 58 / 3e-09 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF08356 [flax] [poplar] EF_assoc_2 EF hand associated CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase CL0023 [flax] [poplar] PF08355 [flax] [poplar] EF_assoc_1 EF hand associated
Representative CDS sequence Show only first row Show all	>Lus10004474 pacid=23169682 polypeptide=Lus10004474 locus=Lus10004474.g ID=Lus10004474.BGIv1.0 annot-version=v1.0 ATGTCGAGACCCGGTTCCAAAGCAGCCGCAGCAGCGGGATCGTCCGCCGCCGCCGGGAAGTCCGGCGTCCGAATCGTCGTCGCTGGCGACCGTGGCACTG GGAAGTCTAGCTTGATAATCACCGCCGCCGTCGACAATTTCCCACCGAGTATGCCGCCTGTTCTCCCTCCGACTAGACTCCCCGAGGATTTCTACCCCGA TAGAGTCCCTGTCACCATTATTGATACTTCCTCCAAGGTAGAGGATACTGGTAAAGTAGCGGAGGAACTGAAGCGAGCTGATGCAGTTGTTTTAACTTAT GCGTGTGATAAGCCAGAGACTCTTGATCGATTGAGTACCTTCTGGCTGCCTAAGCTTCGTCAGTTGGAGGTGAAGGTTCCGGTTATCGTAGTTGGTTGTA AGCTGGATTTGAGGGATGAGAATCAGCAGGTGAGCTTGGAGCAAGTAATGTCTCCGATTATGCAACAGTTCCGAGAGATCGAAACCTGCATCGAGTGCTC GGCTGTGAAGCATATTCAGATCCCTGAGGTGTTCTATTATGCACAAAAGGCAGTGCTTCATCCTACGGGTCCTCTATTTGATCAAGAATCCCAAACACTG AAGCCAAGGTGTGTCAGAGCCTTGAAGCGTATTTTTATTCTTTGTGATAATGACAGAGATGGCGCCCTTAGTGATGCGGAGTTAAATGACTTTCAGGTCA AATGTTTCAATGCCCCATTGCAACCGTCGGAAATTGTGGGTGTAAAGAGGGTTGTTGAAGAAAAGTTGCCTGGTGGAGGAGCGACTGATAGCGGTGGAGG AGCAACTGATAGAGGAGTCAATGAACGTGGGCTGACATTGACTGGTTTCCTCTTTCTCCATGCCTTGTTCATAGAAAAAGGGCGTCTTGAGACAACGTGG ACTGTCCTCAGGAAATTTGGTTACAATAATGATATCAAGCTTGATGATGACTTAATTCCATCATTTAAACGGGCTCCTGACCAGAGTGCTGAGCTTACAA ATGAAGCTATTGATTTCTTAAGGGGGGTCTACGAGCTATTTGACAGTGATTATGATGACAACCTTCGGCCTGCTGAGTTGGATGACATTTTCTCTACTGC TCCGGAAAGCCCCTGGGATGAAGCTCCATACAAGGATTCTGCACAGAGAACTGACATGAATGGAATGTCAGTTTCTGCATTCTTGTCTGAGTGGGCCCTG ATGACCCTTCTAGATCCCTCTCGTGCTGTGGAGAACCTGATTTACATTGGATATCAAGGGGATCCTTCTACTGCTGTCCGTTTGACAAGGAAACGGCGCT TGGACCGCAAGAAGCAACTATCAGAGAGAAATGTCTTCCAGTGCTTTGTCTTCGGACCAAAACAGGCTGGAAAGACTGCGTTGTTGAATTCTTTTATTGG AAGGTCCTACGCAGATGGTTATGCTTCAACAACTGAGGAGAAGCTGGCAGTGAATGCCGTTACTCTTACTGGTGGAGCCAAGAAAACTCTTGTGCTAAGA GAGATTCCTGAAGATGAAGTTGAGGGCTTGCTCTCAAATAAGGAGTCTTTGGCGTCCTGTGACATTGCAGTGTTTGTTTATGACAGTTCTGACGAGTCCT CGTGGAAGAGAACAACGCAATTGCTTGTAGATGTTGCTGGTCACGGTGAGGATACCGGTTATGAGGTGCCTTGCCTGATTGTTGCAGCTAAAGATGATCT TAATTCGTTCCCGATGGCTATACCGGAGTCTACCAGGGTGACTCAAGATATGGGAATAGAGGCTCCGATTCCAATCAGTTCGAGGATGGGCGATACAAAC AACATCTTCCGCAGGATTGTAAATGCAGCTGAGAACCCACATTTGTGCATTCCTGAAACCGAAGCCGGGAAAAGTCGCAAGCAATACCATCGCCTCGTCA ACCGCTCACTAATGGTTGTTTCAGTTGGAGCTGCAGTTGCCATTGTCGGTCTAGCAGCGTACCGTGTTTATGCTGCGAGAAAGAACTCATCGGGCTAA
AA sequence Show only first row Show all	>Lus10004474 pacid=23169682 polypeptide=Lus10004474 locus=Lus10004474.g ID=Lus10004474.BGIv1.0 annot-version=v1.0 MSRPGSKAAAAAGSSAAAGKSGVRIVVAGDRGTGKSSLIITAAVDNFPPSMPPVLPPTRLPEDFYPDRVPVTIIDTSSKVEDTGKVAEELKRADAVVLTY ACDKPETLDRLSTFWLPKLRQLEVKVPVIVVGCKLDLRDENQQVSLEQVMSPIMQQFREIETCIECSAVKHIQIPEVFYYAQKAVLHPTGPLFDQESQTL KPRCVRALKRIFILCDNDRDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVEEKLPGGGATDSGGGATDRGVNERGLTLTGFLFLHALFIEKGRLETTW TVLRKFGYNNDIKLDDDLIPSFKRAPDQSAELTNEAIDFLRGVYELFDSDYDDNLRPAELDDIFSTAPESPWDEAPYKDSAQRTDMNGMSVSAFLSEWAL MTLLDPSRAVENLIYIGYQGDPSTAVRLTRKRRLDRKKQLSERNVFQCFVFGPKQAGKTALLNSFIGRSYADGYASTTEEKLAVNAVTLTGGAKKTLVLR EIPEDEVEGLLSNKESLASCDIAVFVYDSSDESSWKRTTQLLVDVAGHGEDTGYEVPCLIVAAKDDLNSFPMAIPESTRVTQDMGIEAPIPISSRMGDTN NIFRRIVNAAENPHLCIPETEAGKSRKQYHRLVNRSLMVVSVGAAVAIVGLAAYRVYAARKNSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	0	1
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10019153 [exp]	2.0	0.9130
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	2.4	0.9308
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	6.6	0.9255
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	9.2	0.9003
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	9.5	0.8939
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	10.2	0.9007
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	14.5	0.8895
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	15.5	0.9177
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10036235 [exp]	23.0	0.8571
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	23.0	0.8781

Compare expression of checked genes

Lus10004474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.