Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05327 172 / 5e-54 Cyclin family protein (.1) AT2G44740 169 / 6e-53 CYCP4;1 cyclin p4;1 (.1) AT5G07450 163 / 9e-51 CYCP4;3 cyclin p4;3 (.1) AT3G63120 163 / 2e-50 CYCP1;1 cyclin p1;1 (.1) AT5G61650 155 / 2e-47 CYCP4;2 CYCLIN P4;2 (.1) AT3G21870 141 / 5e-42 CYCP2;1 cyclin p2;1 (.1) AT2G45080 140 / 1e-41 CYCP3;1 cyclin p3;1 (.1) AT3G60550 137 / 4e-40 CYCP3;2 cyclin p3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029933 [exp] 390 / 3e-140 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10022038 [exp] 186 / 2e-59 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10042582 [exp] 182 / 5e-58 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10027148 [exp] 158 / 9e-48 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10039697 [exp] 155 / 2e-47 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10043003 [exp] 155 / 3e-47 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10032505 [exp] 155 / 3e-47 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10042873 [exp] 138 / 1e-40 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 127 / 6e-37 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023000 [exp] 208 / 2e-68 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 200 / 3e-65 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.005G209800 [exp] 197 / 6e-64 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.002G052800 [exp] 197 / 2e-63 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.012G114600 [exp] 176 / 2e-55 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.014G050400 [exp] 174 / 4e-55 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.015G112140 [exp] 165 / 2e-51 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.007G121500 [exp] 160 / 3e-49 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.002G143400 [exp] 146 / 7e-44 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 144 / 3e-43 AT3G60550 343 / 3e-121 cyclin p3;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10004475 pacid=23169722 polypeptide=Lus10004475 locus=Lus10004475.g ID=Lus10004475.BGIv1.0 annot-version=v1.0 ATGGGAACCCGAATCACAGGTTCTACCTACGAGTCGAGGGCCAATCAATCCAGTACCGAGCTCCCTCGACTCGTCTCGCTCCTTGCATCTTCTCTCGAAA AGGCGGTGCAGAGGAACGACAAGAAGAAGACATCATCAGATGTCAACAACACAGTGTTCCACGGATCAAAACCGCCAGCCCTGACCATCAAACAGTACCT TGAACGAGTCTTCAAGTACGCGAAATGCAGCACTTCGTGCTTTGTCGTGGCTCACATCTACCTCGAGAGGTTCTGCCAGAGGAGCAGCAGCTGCCTGACT CCCTTGAACATCCACAGGCTCCTGATCACGAGCGTCATGGTGGCAGCCAAGTTCCTTGACGACAAGTGTTACAACAACGAGTATTATGCGAGAATTGGAG GAGTGAGTATAGAGGAGATGAACAGAATGGAGATGAAGTTCTTGTTCAGCTTGGATTTCAGGCTCAATGTCACTGTGGAGAGCTACATAAGTTACTGTTC TCAACTGGAAAGGGAAGGACGTGGAAGGGATCATTTTCCGGCGATGATGATTCCGGCAAGGTTGGAGAGCAGAGTCCTGCCACAGCCACCGCAGCCTCCA CGTAGGCTGATATCAACAGTTGGGAGATAA
AA sequence Show only first row Show all	>Lus10004475 pacid=23169722 polypeptide=Lus10004475 locus=Lus10004475.g ID=Lus10004475.BGIv1.0 annot-version=v1.0 MGTRITGSTYESRANQSSTELPRLVSLLASSLEKAVQRNDKKKTSSDVNNTVFHGSKPPALTIKQYLERVFKYAKCSTSCFVVAHIYLERFCQRSSSCLT PLNIHRLLITSVMVAAKFLDDKCYNNEYYARIGGVSIEEMNRMEMKFLFSLDFRLNVTVESYISYCSQLEREGRGRDHFPAMMIPARLESRVLPQPPQPP RRLISTVGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	0	1
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	2.6	0.8364
AT4G15450			Senescence/dehydration-associa...		Lus10034970 [exp]	5.8	0.8339
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	8.4	0.7971
					Lus10016821 [exp]	8.7	0.8250
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	9.9	0.7463
AT3G05327			Cyclin family protein (.1)		Lus10029933 [exp]	11.8	0.8170
					Lus10008178 [exp]	16.9	0.7257
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	17.1	0.7390
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	22.4	0.7233
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	28.6	0.7574

Compare expression of checked genes

Lus10004475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.