Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 92 / 5e-20 F-box family protein (.1) AT4G10660 77 / 2e-15 CDC68-related (.1) AT3G56470 77 / 4e-15 F-box family protein (.1) AT4G00893 75 / 3e-14 unknown protein AT1G49360 73 / 2e-13 F-box family protein (.1) AT4G12370 70 / 6e-13 unknown protein AT4G10695 68 / 9e-13 CDC68-related (.1) AT3G18720 67 / 1e-11 F-box family protein (.1) AT4G10700 52 / 3e-07 unknown protein AT4G12382 44 / 4e-05 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029943 [exp] 927 / 0 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10029926 [exp] 325 / 2e-109 AT1G57790 72 / 4e-15 F-box family protein (.1) Lus10042359 [exp] 246 / 1e-78 ND / Lus10035341 [exp] 147 / 6e-41 ND / Lus10024904 [exp] 122 / 5e-29 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10019204 [exp] 91 / 6e-20 AT1G57790 79 / 2e-16 F-box family protein (.1) Lus10014208 [exp] 75 / 3e-14 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10017027 [exp] 74 / 1e-13 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10021352 [exp] 71 / 8e-13 AT1G57790 292 / 1e-96 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106800 [exp] 158 / 1e-42 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.016G079300 [exp] 81 / 3e-16 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.012G106750 [exp] 72 / 2e-13 AT1G57790 57 / 7e-09 F-box family protein (.1) Potri.006G212600 [exp] 67 / 1e-11 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.002G015700 [exp] 42 / 0.0008 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004476 pacid=23169709 polypeptide=Lus10004476 locus=Lus10004476.g ID=Lus10004476.BGIv1.0 annot-version=v1.0 ATGGGCAGCTTTGATGGCCAGCTCTACCTTCTCTCTGACTGCTGCAAAACCCTCTTTAAGCTCCAGATCGACGAAGAGCATTGCTGCATCAGGTTACTTG ACTTGAACCTGAGGAAACCTGACACGTATGAGAACCACATCAATAAGTGCTTCTACCCCAAGTTGTCTCTGGTTCAGTACTCACCAACCGAGCTTATGGT TGTTGAGGTATATGTGAATGATTACAGGGAGGATCTCGGAGCCTTTGACAATGATTCTAGAGCCGTTGAGTTGTACACTGTGAACTTGCAAGACAAAGTA TGGACAAGGCTTCAAACTCTGCCCCAAGATTCTGCAGTCTTCATAGGAATTGATCCGTGCAATATCTTTCTCTGCAATGGTGTCCGCGGTGGGAACACCG TTTACTTCCTGCTTCGGAATGACAGGTATCTCTACGCTTATGATGTTGGGGAGAGAAGTATAATTGTTTCGTTGCCATCGCCGGATGTGAAGCCTGATGT CCTCCAAGCGGTATGGGTGCCACCTCTCTTTTCTTTGTCCTCCACGGCCAATGATGTTGATACCCAAATGCAACATCAATCCGCGAGTGACATGAGCATA ACGGTGTCGGAAGATCGGTGGTGTAACATCCCAATCCACCTTCTTAGCATTATACAGTCTCTTTTGTTTGGGGCGGACCGATGCTGCTTCCGCCTTGTCT GCAAGACATGGCAATTGGCATTCTCTGCAGAAACCACCTCTACGACGAATATGGGAGGCCACGGACTCCCGTTGCTTGTACACATAAGGAATAATGACAA AGATCGAGTCGGTATCTTCGACCCCATAACCAACTCCAGGGCAACATTGCATGCGCCTGATTTGACAGGGGGAGTTGTGATACGTTGCTCGAAGCACGGA TGGTTACTTGTAACGGAAGGAAGCCACGGTACAAGTATCTTCTTCTACAACCCTTTCACCAAACAAAGGATTGATCTTCCAAACCTGGAGGATTCATATG AATTTGATGGGATCACCTTCAGTTCACCTCCAACCTCGTCTGACTGCATGGTTTTCGGCTACTCAATCTCATCACCGGATGTGACACTTAGTTATCTTTA TCGAGGAAGAAATAGATGGCAAACTCGTGAAATGGGTATCGATAAGATTGGAAGCCATAAGTCGTACGCTAATCTTGTTTACCACCGAGGGAAATTTTCT TTCATACCAAAACAAAGAAATCCAGACTTGACTAATAAGCCTTATAGCTCAATAAGAAGAATCAATGTGGTGGAGTGTGATGGCAGACTCCTATTAGTGG CTACCGGTCACCTCGGAAGGTTTGTGCAAGTTTTCGAGCTCAATCAAGATACCATGGTTGGGAAAACCCAATTGGTGCAAGTTTTGGAGCTCAATGAAGA TGCCATGGTTGGGAAAGAAGTCGACACTTTGGGAGGCAACATGCTGTTTCTGAGCTCAGGTGGTTCTACCTTATCAGCGTCGTGCAAGGGAGTGGAGATC TCAGGGTTGGGGAACAAGGTGTTCTTGGATAGGTTTAATGGTGAAGATGGTATGTTCTATTCTCTAGCAACCAGAAAGTTCCACACTTTCTGGAGCGGAT ATAACAGTCATGACTGGTGCAACACCAAGGAATATACCCACAGTGCTTGGATCGAACCCAACTTCGAAATGCAAACAAAAGAGCAACTCCAATGGGTTTG A
AA sequence Show only first row Show all	>Lus10004476 pacid=23169709 polypeptide=Lus10004476 locus=Lus10004476.g ID=Lus10004476.BGIv1.0 annot-version=v1.0 MGSFDGQLYLLSDCCKTLFKLQIDEEHCCIRLLDLNLRKPDTYENHINKCFYPKLSLVQYSPTELMVVEVYVNDYREDLGAFDNDSRAVELYTVNLQDKV WTRLQTLPQDSAVFIGIDPCNIFLCNGVRGGNTVYFLLRNDRYLYAYDVGERSIIVSLPSPDVKPDVLQAVWVPPLFSLSSTANDVDTQMQHQSASDMSI TVSEDRWCNIPIHLLSIIQSLLFGADRCCFRLVCKTWQLAFSAETTSTTNMGGHGLPLLVHIRNNDKDRVGIFDPITNSRATLHAPDLTGGVVIRCSKHG WLLVTEGSHGTSIFFYNPFTKQRIDLPNLEDSYEFDGITFSSPPTSSDCMVFGYSISSPDVTLSYLYRGRNRWQTREMGIDKIGSHKSYANLVYHRGKFS FIPKQRNPDLTNKPYSSIRRINVVECDGRLLLVATGHLGRFVQVFELNQDTMVGKTQLVQVLELNEDAMVGKEVDTLGGNMLFLSSGGSTLSASCKGVEI SGLGNKVFLDRFNGEDGMFYSLATRKFHTFWSGYNSHDWCNTKEYTHSAWIEPNFEMQTKEQLQWV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	3.7	0.9742
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10010758 [exp]	4.1	0.9487
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	5.1	0.9709
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	6.9	0.9675
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	7.3	0.9694
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	8.7	0.9651
					Lus10015828 [exp]	10.1	0.9645
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	10.6	0.9628
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	11.4	0.9543
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	12.0	0.9429

Compare expression of checked genes

Lus10004476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.