Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55000 305 / 2e-105 peptidoglycan-binding LysM domain-containing protein (.1.2.3) AT5G08200 50 / 5e-07 peptidoglycan-binding LysM domain-containing protein (.1) AT5G23130 47 / 7e-06 Peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029925 [exp] 488 / 3e-177 AT1G55000 320 / 1e-111 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Lus10040979 [exp] 48 / 4e-06 AT5G08200 257 / 1e-82 peptidoglycan-binding LysM domain-containing protein (.1) Lus10010198 [exp] 48 / 4e-06 AT5G08200 277 / 9e-89 peptidoglycan-binding LysM domain-containing protein (.1) Lus10013432 [exp] 48 / 4e-06 AT5G23130 248 / 2e-79 Peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021600 [exp] 292 / 9e-99 AT1G55000 280 / 2e-94 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.005G032100 [exp] 221 / 4e-73 AT1G55000 188 / 3e-61 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.012G036600 [exp] 50 / 9e-07 AT5G23130 275 / 6e-90 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G071500 [exp] 45 / 3e-05 AT5G23130 292 / 1e-95 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G092800 [exp] 44 / 6e-05 AT5G23130 284 / 1e-92 Peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10004477 pacid=23169721 polypeptide=Lus10004477 locus=Lus10004477.g ID=Lus10004477.BGIv1.0 annot-version=v1.0 ATGAACTGCTGTTGCGGCGAAGAGTCCGCCGACGACGGAGAAAACCCACTTCCTCCCACCCTTACCCAACACCTGAACCCCTCTGCAGCGTCCGCCGATG CCCCTTTCCCGACCATTTCTCCAATGAACTCCAACTTCTCCGCCTTGACCTGCCGCGACACCCTCCGCCTGATCCTGGAGAAGCTGGCCGTGGCCGACCT TGCCAGATCCAGCTGCGTCTGCCGCGTCTGGAACTCGGTGGCCTCCGATGACGAGATCACGCGGGGAGCGTTCATGTCTCCGTGGAAACTGAAGGAGGTG ATCGGGAAGCCGGCCTCCGGTGGGTTCTGGCGGGACAACAGGATCGGGAAGTTCGCGATCTCGCACAGGATCGCCAGAGGGGATTCCGTTGCTAGTCTCG CCGTCAAGTACTCCGTTCAAGTTATGGACATCAAAAGGCTGAACAACATGATGAGCGACCACGGAATATACTCGCGAGACAGACTGTTGATTCCGATTAG CGATCCAGTGCTCCTGATAGATTCCACCTGCTACATAGAGTTGGATTCATACGCTAAAAGGGAGGTGGCTGTTCTGTACCTCACTGGCCAGCCAGAGAGA AAGCTCATTCCTTCATCAAACGATGGGGCTTCAGAGCGTGGCCGAAGAAGGGTTCTCGATTCGTTAAGGAGAAGCATGCAAGTCGATGATGGGACGGCTC TCTACTACCTCACTATCTCAGATGGGGACCCTCGTGCTGCACTCTCACAATTCTCGGCAGATCTCAGGTGGGAAACACAGGTTGGTTTGTCCTAA
AA sequence Show only first row Show all	>Lus10004477 pacid=23169721 polypeptide=Lus10004477 locus=Lus10004477.g ID=Lus10004477.BGIv1.0 annot-version=v1.0 MNCCCGEESADDGENPLPPTLTQHLNPSAASADAPFPTISPMNSNFSALTCRDTLRLILEKLAVADLARSSCVCRVWNSVASDDEITRGAFMSPWKLKEV IGKPASGGFWRDNRIGKFAISHRIARGDSVASLAVKYSVQVMDIKRLNNMMSDHGIYSRDRLLIPISDPVLLIDSTCYIELDSYAKREVAVLYLTGQPER KLIPSSNDGASERGRRRVLDSLRRSMQVDDGTALYYLTISDGDPRAALSQFSADLRWETQVGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55000			peptidoglycan-binding LysM dom...		Lus10004477 [exp]	0	1
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	2.0	0.8576
AT3G26890			unknown protein		Lus10035170 [exp]	3.9	0.8651
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	4.0	0.8768
AT5G61670			unknown protein		Lus10016713 [exp]	4.7	0.8701
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	6.3	0.8426
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	9.2	0.8490
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	10.0	0.8107
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	10.7	0.8145
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	11.4	0.8106
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	11.4	0.8511

Compare expression of checked genes

Lus10004477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.