Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54990 395 / 5e-134 RGR1, AXR4 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029924 [exp] 685 / 0 AT1G54990 465 / 1e-161 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021500 [exp] 510 / 6e-179 AT1G54990 467 / 6e-162 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004478 pacid=23169691 polypeptide=Lus10004478 locus=Lus10004478.g ID=Lus10004478.BGIv1.0 annot-version=v1.0 ATGGCGATAATTACAGAGGAACCAGAACCGGAGCCATCACCGCCGGTGGTGAAAACCCCATCGCCGAAGCCAAACAAGCCCAGCAACAGCCCATTTGTCT TCTGGTTCTACTTTACACTAGGAGTATCGATAATCACTCTATCAATAGTATTCCTCTCTTCCTTCTCCCAATCCTCAGACCCTAAATCGTTATTCCTCTC ACTCTCATCCCCCCTCCGTAGCCACTACTCCAACGGCCGGATCGTGAAAGTACAGCTGGCTCAGAGTCAGAAGCCGGTCGAGGTCTTCGTCTTCCAAGGT AATAAGATCCATGGCGGAAGCGAGAATGTCCTGATTGTTCACGGATTAGGTTTGAGTTCATTCTCCTTCAGAAAAGTTTTGACCTTTTTAGCTTCTAGAG GGATTCATGGGTCTGCGTTTGACTTTCCCGGGAATGGCTTCTCTGAAAAATCAAGGGAAGTAATGGAAGAAAGAGGAAATGGTTTCTTTGAGAGGTTGTT CGATGTGTATGGTTTGATTAAGGAGAAAGGTTTGTTCTGGGCGTTTGATAACATGGTTGAAACTGGTGAGCTTCCTTATGAAGCTGTTCAGTCTCATTTC AGTAAGGAAAAGAGAGTGCTTAGGCCAATTGTGTTGGATAGTGAAGAGATTGGGAAAGTTTTGGGGCAAGTGATTGGGACCATAGGGTTAGCTCCTGTGC ATTTGGTTCTGCACGATTCGAGCTTAAACATGGTTGCGAATTGGGTTTCGGAGAATCCTAACTTGGTTAGGAGTGTGACACTTGTTGATACTGGATCAAG ATCAGCTCTCCCTTTGTGGGTTCTTCAGCTTCCTTTGCTTAGAGAGGTCGTTTTAGGGTCGGACTTTGTGTACCGGAGGCTGATTAATGCGTGTTGTTCG AAGGGGATCGGTGGTGGCGATTTGGAATCGTACAGGATGGTGTTGAGAGATGGGAGAAGTGCTGTTGTGGGAACAGAGATGATGATGAATGCTAGCTTCG ATGTAGCGGAATGGGGAGGGTTGGATGGTGTGAAAGGGATGCCAATGCAAGTGGTTTGGTCGAGGAGTTGGTCGAAAGAGTGGAGTGATGAAGGGCGTAG AGTGTCTGAGGCTCTTCCTGGGGCGAAATTCGTTGAACATTCCGGAGGGCGATGGCCTCAGGATGACACAGCCGAAGAGATAGGTGAGCATGTCGTGACA TTTGTATCATCTCTACCGAAATCAATTCGAGAAGCTGAAGAGGAACGCGTACCAGAACACATCCAGAAGATGCTTGACGAGGCTAAACAGAATCCCAACC ACCACCACCACCATGGCCATTCCGGCCTCGATCATGGACACAGCTCCGAAGGGTACATGGACGCTTACGGGCTTGGCCAAGCCTGGGGCAGCTAG
AA sequence Show only first row Show all	>Lus10004478 pacid=23169691 polypeptide=Lus10004478 locus=Lus10004478.g ID=Lus10004478.BGIv1.0 annot-version=v1.0 MAIITEEPEPEPSPPVVKTPSPKPNKPSNSPFVFWFYFTLGVSIITLSIVFLSSFSQSSDPKSLFLSLSSPLRSHYSNGRIVKVQLAQSQKPVEVFVFQG NKIHGGSENVLIVHGLGLSSFSFRKVLTFLASRGIHGSAFDFPGNGFSEKSREVMEERGNGFFERLFDVYGLIKEKGLFWAFDNMVETGELPYEAVQSHF SKEKRVLRPIVLDSEEIGKVLGQVIGTIGLAPVHLVLHDSSLNMVANWVSENPNLVRSVTLVDTGSRSALPLWVLQLPLLREVVLGSDFVYRRLINACCS KGIGGGDLESYRMVLRDGRSAVVGTEMMMNASFDVAEWGGLDGVKGMPMQVVWSRSWSKEWSDEGRRVSEALPGAKFVEHSGGRWPQDDTAEEIGEHVVT FVSSLPKSIREAEEERVPEHIQKMLDEAKQNPNHHHHHGHSGLDHGHSSEGYMDAYGLGQAWGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	0	1
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	1.7	0.8343
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	3.2	0.8479
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	4.2	0.8531
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10005038 [exp]	6.8	0.8002
AT4G15790			unknown protein		Lus10008380 [exp]	7.9	0.8238
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	11.2	0.8011
AT1G28120			unknown protein		Lus10030429 [exp]	11.3	0.8245
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	12.6	0.8319
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	14.3	0.8330
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	15.7	0.8273

Compare expression of checked genes

Lus10004478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.