Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05350 894 / 0 Metallopeptidase M24 family protein (.1) AT4G36760 511 / 1e-175 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) AT1G09300 57 / 3e-08 Metallopeptidase M24 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029923 [exp] 1129 / 0 AT3G05350 978 / 0.0 Metallopeptidase M24 family protein (.1) Lus10041716 [exp] 508 / 7e-174 AT4G36760 987 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10024034 [exp] 447 / 1e-150 AT4G36760 924 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10010905 [exp] 62 / 1e-09 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 61 / 2e-09 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10008578 [exp] 42 / 0.001 AT4G29490 768 / 0.0 Metallopeptidase M24 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021400 [exp] 951 / 0 AT3G05350 1025 / 0.0 Metallopeptidase M24 family protein (.1) Potri.007G029700 [exp] 503 / 5e-172 AT4G36760 1015 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.007G030050 [exp] 249 / 4e-79 AT4G36760 397 / 4e-136 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145576 [exp] 99 / 7e-25 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.T045100 [exp] 99 / 7e-25 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145584 [exp] 68 / 2e-14 AT4G36760 85 / 2e-21 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.013G007100 [exp] 49 / 9e-06 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2) Potri.006G149500 [exp] 45 / 0.0001 AT4G29490 767 / 0.0 Metallopeptidase M24 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0356 [flax] [poplar] AMP_N-like PF01321 [flax] [poplar] Creatinase_N Creatinase/Prolidase N-terminal domain CL0356 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10004479 pacid=23169689 polypeptide=Lus10004479 locus=Lus10004479.g ID=Lus10004479.BGIv1.0 annot-version=v1.0 ATGCGGAGAGGGTTCATCTCTGGCTTCACTGGGAGTGCTGGAACTGCTGTGGTTACTAAAGACATGGCTGCCCTTTGGACTGATGGCCGATACTTTCTCC AGGCTGAGAAGCAGTTGAGCTCTAGCTGGATGCTTATGCGTGCGGGTAACAATGGAGTTCCAACAGCAAGTGAATGGTTGAATCATGTTTTAGCTCCTGG TGCTAAAGTTGGGATTGATCCTGTGGAACAGTTCCTTTTCTCCTTTGATGCTGCTGAGGAATTGAAAGGGAATATAGCCAAGAGGGATCACAAGTTAGTG TACTTGTATGATGTCAACCTAGTGGATGAGATATGGAAAGAATCAAGACCGGAACCTCCGATCGAACCGATTAGGGTCCACGAGCTGAAATATGCTGGTG TGGAAGTCGGTTCTAAGCTATCTTGGCTCAGGACTGAACTTGTCGATGCTGGTTCTTCGGCAATTGTTGTTTCCATGCTTGATGAGATTGCCTGGCTTTT GAACTTGCGAGGCGGTGATGTTCCTCATTCACCTGTCATGTATGCATATCTAGTTATTACGATGGACGATGCAAAGTTGTTTGTGGATAGTTCTAAAGTG ACTCCGGAAGTCTCGAGTCATTTGAAGAATGCAGGTGTTCAGTTGAGGCCATACGAGTCCATTCTTTCTGAAATTGAAAGTTTGGCTTTGCAAGGTACAG AAATGTGGTTGGATCCATCTTCCGTCAATGCTGCGATAGTAAATTCATATAGGACTGCTTGTGACAAAACAAGTGGAGCTCGAGCTGGTCAATCTTTGGG ACCTTCTGGAGTTTATAGGACATCTCCAATCTCTTTAGCAAAAGCACTGAAGAATCCTTGCGAGTTAGAAGGCATGCGCAATGCTCACCTTAGAGATGCA GCTGCTTTGGTACAGTTTTGGACCTGGCTAGAAGACGAAATTCGCAAGGGCGCAAAGGTAACAGAAGTAGACGTAGCTGATAAACTTCTCGAGTTCCGTA AACAGCAAGATGGATTCATCGACACTAGCTTCGATACAATAAGTGGTTCTGGCGCGAATGGTGCTATCATACACTACAGAGCTGAACCAGAGAGCTGTAG CATTGTGGATTCAAAGAACCTCTTTTTGTTGGACAGTGGAGCTCAATACGTTGACGGAACGACAGATATTACAAGGACAGTACACTTTGGTGAACCAACA TCCCACGAAAAGGAATGCTTCACCCGGGTTTTACAGGGCCATATAGCTCTCGATCAAGCAGTATTTCCTGGAAATACTGCCGGCTTTGTGTTGGATGCAT TCGCTCGTTCCTTTCTGTGGAAAATAGGGCTTGACTACCGCCACGGGACTGGACATGGCGTGGGAGCGGCTCTGAACGTTCACGAAGGCCCTCAAAGCAT TAGCTTTCGGTTTGGGAACACAACTCCACTGCAGAAGGGCATGATAGTGAGTAACGAGCCTGGATACTATGAAGATCATGCATTTGGTATCCGAATCGAG AATCTTCTTCATGTCAAAGAGGCAAATACTCCATACCGGTTCGGAGGAATCGGCTACCTGGATTTCGAAAAGCTCACGTTCGTCCCCATTCAGAACAAAT TGGTGGATATATCCTTGCTTTCTGATGCTGAGATTGATTGGCTCAACGATTACCATTCGCAAGTCTGGGAGAAGGTGTCTCCTCTGGTTGAAGGTTCAGC TAAGCAATGGCTATGGGACAACACTCGACTACTTGTTCGGCAGTAA
AA sequence Show only first row Show all	>Lus10004479 pacid=23169689 polypeptide=Lus10004479 locus=Lus10004479.g ID=Lus10004479.BGIv1.0 annot-version=v1.0 MRRGFISGFTGSAGTAVVTKDMAALWTDGRYFLQAEKQLSSSWMLMRAGNNGVPTASEWLNHVLAPGAKVGIDPVEQFLFSFDAAEELKGNIAKRDHKLV YLYDVNLVDEIWKESRPEPPIEPIRVHELKYAGVEVGSKLSWLRTELVDAGSSAIVVSMLDEIAWLLNLRGGDVPHSPVMYAYLVITMDDAKLFVDSSKV TPEVSSHLKNAGVQLRPYESILSEIESLALQGTEMWLDPSSVNAAIVNSYRTACDKTSGARAGQSLGPSGVYRTSPISLAKALKNPCELEGMRNAHLRDA AALVQFWTWLEDEIRKGAKVTEVDVADKLLEFRKQQDGFIDTSFDTISGSGANGAIIHYRAEPESCSIVDSKNLFLLDSGAQYVDGTTDITRTVHFGEPT SHEKECFTRVLQGHIALDQAVFPGNTAGFVLDAFARSFLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRFGNTTPLQKGMIVSNEPGYYEDHAFGIRIE NLLHVKEANTPYRFGGIGYLDFEKLTFVPIQNKLVDISLLSDAEIDWLNDYHSQVWEKVSPLVEGSAKQWLWDNTRLLVRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	0	1
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	2.8	0.8959
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	3.7	0.8894
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	3.9	0.8736
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10022856 [exp]	9.7	0.7501
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	9.8	0.8525
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10022429 [exp]	9.9	0.8265
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	10.2	0.8492
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	11.4	0.8413
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	11.6	0.8531
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	11.8	0.8567

Compare expression of checked genes

Lus10004479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.