Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39660 801 / 0 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT3G08860 635 / 0 PYD4 PYRIMIDINE 4 (.1) AT2G38400 617 / 0 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT1G80600 177 / 3e-50 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 152 / 6e-41 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G22200 137 / 3e-35 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 90 / 4e-19 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 83 / 8e-17 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 44 / 0.0003 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029922 [exp] 923 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10025262 [exp] 624 / 0 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10009086 [exp] 535 / 0 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10008025 [exp] 179 / 3e-50 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 172 / 2e-48 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 167 / 2e-46 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 167 / 3e-46 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10010465 [exp] 141 / 2e-36 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10003810 [exp] 141 / 2e-36 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085600 [exp] 815 / 0 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G106800 [exp] 665 / 0 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 657 / 0 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.005G082100 [exp] 331 / 7e-113 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1) Potri.007G080000 [exp] 282 / 4e-94 AT4G39660 278 / 5e-93 alanine:glyoxylate aminotransferase 2 (.1) Potri.017G053500 [exp] 176 / 9e-50 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 174 / 5e-49 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 159 / 2e-43 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.016G018500 [exp] 142 / 4e-37 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G020900 [exp] 139 / 5e-36 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10004480 pacid=23169692 polypeptide=Lus10004480 locus=Lus10004480.g ID=Lus10004480.BGIv1.0 annot-version=v1.0 ATGACGTTCCTCAGGGCGACCGTGCAGAGGGCGAATCGGCACCACTTCGCAAAACTCGCTCCCGGGTGCCGTTTCTTTTCCGACGCTCTGCCGCAGCTCC CGACGTTCGATCATAAGCCCAAGCCCTACAACGGGCCATCGGCCGAGGAAGTCCTTCAGAAGCGCAAGAAGTTTCTTGGTCCTTCACTCTTCTACTACTA TCAGAAACCTCTGAATATAGTGGAAGGCAAGATGCAATATCTGTTTGATGAGAATGGGAGGCGGTATCTGGACGCCATTGCTGGGATCGTCACTGTTTCT GCTGGCCACTGCCATCCTGAGATTTTGAAAGCGATCCATCAACAAAGTGAGCTGCTTCAGCATGCAACCACCATTTACTTGCATCACGCGATTGCTGATT TTGCCGAAGGATTGGCGGCGAAGATGCCTGGAAACCTTAAGGTTGTGTATTTTGTAAATTCTGGGACTGAAGCAAATGAATTGGCCATGCTGATGGCTAG GCTGTATACTGGTAACCTTGAGATGATCTCCCTGAGGAATGCCTATCATGGTGGGAGCTCTAATACTATAGGGCTCACGGCTTTGAATACTTGGAAATAC TCGATACCGCAGGGTGAAATTCACCATGTGATGAATCCGGATCCATACAGAGGGATCTTTGGCGCTGATGCAGCTGGGTACGCCAAAGATGTGGAAGACC ACATTGCTTTCGGTACATCTGGAAAAGTTGCTGGATTTATTGCCGAGACAATTCAGGGAGTTGGAGGAGCAGTTGAATTGGCCCCCGGGTATTTGAAATT GGTATATGAAACCGTTCGAAAAGCTGGCGGGGTATGCATCGCTGATGAAGTGCAAACTGGATTTGGACGAACAGGAAGTCACTATTGGGGATTCGAAACA CAAGGTGTCATCCCTGACATTGTGACGATGGCTAAGGGGATTGGCAACGGTCTGCCATTAGGAGCAGTGGTGACAACACCAGAAATAGCTAGCGTGTTGG CTCAGAAAGTTCAGTTCAACACTTTTGGTGGGAACCCAGTCTGTTCTGCCGGTGGACTTGCAGTTTTGAGAGTTCTTGACAAAGAGAAGCGTCAAGAACA TTGTGCTGACATCGGCTCTCACTTACTTAAACGTCTGGGAGACCTGAAAGAAAAACACGACATCATTGGGGATGTTAGAGGCAGGGGTCTGATGTTGGGT GTTGAACTAGTTACTGACAGGAAGGAGAAGACACCGGCCAAAGCAGAAACGTTAGTCTTGTTCGAAAAGCTCCGAGAGCTGGGTATTCTAGTTGGGAAAG GAGGACTCAATGGCAATGTGTTTCGAATAAAACCACCAATGTGCTTCTCCAAAGATGATGCTGACTTTCTTGTGGATGCTTTGGACTATTCTATGTCAAA GCTATGA
AA sequence Show only first row Show all	>Lus10004480 pacid=23169692 polypeptide=Lus10004480 locus=Lus10004480.g ID=Lus10004480.BGIv1.0 annot-version=v1.0 MTFLRATVQRANRHHFAKLAPGCRFFSDALPQLPTFDHKPKPYNGPSAEEVLQKRKKFLGPSLFYYYQKPLNIVEGKMQYLFDENGRRYLDAIAGIVTVS AGHCHPEILKAIHQQSELLQHATTIYLHHAIADFAEGLAAKMPGNLKVVYFVNSGTEANELAMLMARLYTGNLEMISLRNAYHGGSSNTIGLTALNTWKY SIPQGEIHHVMNPDPYRGIFGADAAGYAKDVEDHIAFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYETVRKAGGVCIADEVQTGFGRTGSHYWGFET QGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVLAQKVQFNTFGGNPVCSAGGLAVLRVLDKEKRQEHCADIGSHLLKRLGDLKEKHDIIGDVRGRGLMLG VELVTDRKEKTPAKAETLVLFEKLRELGILVGKGGLNGNVFRIKPPMCFSKDDADFLVDALDYSMSKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	0	1
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	4.2	0.9161
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	6.2	0.8983
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	7.3	0.8887
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Lus10038969 [exp]	10.4	0.8915
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	12.4	0.8778
					Lus10033509 [exp]	13.2	0.8874
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	13.8	0.8901
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10028736 [exp]	14.1	0.8702
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10030323 [exp]	18.4	0.8609
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	18.7	0.8921

Compare expression of checked genes

Lus10004480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.