Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65450 490 / 2e-169 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G41040 224 / 2e-66 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 196 / 3e-56 HXXXD-type acyl-transferase family protein (.1) AT3G48720 191 / 3e-54 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 182 / 7e-51 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 160 / 7e-43 HXXXD-type acyl-transferase family protein (.1) AT1G03390 157 / 7e-42 HXXXD-type acyl-transferase family protein (.1) AT3G03480 145 / 2e-37 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT1G28680 142 / 1e-36 HXXXD-type acyl-transferase family protein (.1) AT2G19070 141 / 3e-36 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029920 [exp] 832 / 0 AT1G65450 490 / 9e-172 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10012552 [exp] 235 / 2e-70 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 213 / 3e-62 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 207 / 4e-60 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10026123 [exp] 187 / 1e-52 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10035190 [exp] 184 / 3e-51 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10038184 [exp] 180 / 3e-50 AT1G65450 200 / 2e-59 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10035189 [exp] 179 / 1e-49 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 179 / 2e-49 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180000 [exp] 517 / 1e-179 AT1G65450 565 / 0.0 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.015G100800 [exp] 218 / 2e-64 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 217 / 7e-64 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 201 / 2e-58 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 202 / 4e-58 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.002G244600 [exp] 189 / 2e-53 AT1G65450 205 / 5e-61 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.003G183900 [exp] 181 / 1e-50 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 177 / 4e-49 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 176 / 1e-48 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 176 / 2e-48 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10004481 pacid=23169715 polypeptide=Lus10004481 locus=Lus10004481.g ID=Lus10004481.BGIv1.0 annot-version=v1.0 ATGGGAGAAGTAGATCACGGCCAGAAGATTGTGGATGACCTCCGCGTGGAGATCAAGGATGTGTGCTACGTATATCCGTCGGAGCCGATGGATCGAACTT CGATGTTCATGTCGAACATCGACCAGGTCTTGAACTTCGACGTCCAGACCGTCCATTTCTTTGCCGCCAGCCGAGATTTCCCGCCTCGGTTAGTGACCCA AACGTTGAAGGAGGCGCTGGGCAAGGTGCTGGTTCCGTACAGCTTCCTGGCGGGGAGGTTGAATACGGACGGGAAGACAGGACGGCTGGAGTTCGATTGC AACGGCAAAGGCGTGGGGTTCGTCGCCGCGGAGAGCGCGCGTAGCGTGGATGAGATTGGGGACTTGAGTTATCCAAACCGGGCTTTCGGGCAGCTGGTTG CCCAGACGGTCCATAACTTGCTAGACCGGACTGCAGCTCCCTGCCGTCCCCCTTCCGATGATGATGAATATGATCATCCACTTGCTATTTTTCAGGTGAC TTCGTTTAGGTGCGGTGGGTTTGCAATTGGGTTATCTATCAACCATACAACTTTCGACGGAATAAGCACGAGGCTGTTCTTGGACAACTTGGCCGCCGTC GCCGGTGGGAAACCACTCCTCGTCCCTCCTTGCAACGACCGTCGCCTTCTAGCCGCCAGATCACCTCCACGTGTCACCTATCCCCACCCCGAGCGCCGTC AACTTAATGCTTCAGCTGCTCAAGTGTTCGAAACAACCGAGGAAGATCTGGACTTCAAGATCTTCCGGTTGACATCCTCACACGTGTCCCTCCTCAAACA AAAAGCGAGAAATCCGCATGCCACGTCACCATCGCCGGTGTCCGGATTCTACGCAGTCGCTGCTCTTATATGGAGGTGCAAGGCTTTGTCCTACTCTCCA TTAGGCGGAGGAGGTGATCAAGACAGGGTATCCACGATCCTGTACGCGGTGAACATAAGGCACAAACTGCTGACCCCACCACTGGCCGCATCCTACACGG GGAACGCCGCACTCACAGCCTACGCGAGGGCGAAATGCAGCGAGATATTGGAGGCGCCGCTGTGGAGGATGGCGGAGATGGCGGCGGAGGGCGGGAAGAT GATAACCGAGGAGTACGTGAGGTCGGTGATAGACTGGGGGGAGGTGTACGGCAGAGGGTTCCCACATGGAGAAGTGTTGGTTTCTTCGTGGTGGAGGTTA GGGTTTGCGGAGGTTGATTACCCTTGGGGTAAACCTATCTACAGCTGCCCGGTCGTCCATCATAGGAAGGACGTCGTGCTGGTCTTCCCGGACAGCGTTG ACGAAGATGGTGTTAATGTCATTGTTGCCCTCCCTCCGCATCAGATGCGCAAGTTTGGTTCGGATTTCAATGCGCCATGTTCGTTATTTGCAGCCGGAGG TGGCGAAGAAGACAGGGTTTCCACCATCCTATACGCGGTGAACATAAGGCACAAACTACTGACCCCACCACTGGTCGCATCCTACACAGGCAACGCCGTA CTCACAGCCTACGCAAGCGCGAAATGCAGCAAGATACCGGAGGCGCCGCTGTGGAGGATGGCAGAGATGGCGGCGGAGGGCGGGAAGAGGATAACCGAGG AGTACGCGAGGTCGGTGATAGACTGGGGGGAGGTGTACGGAAGAGGGTTCCCACAAGGAGAAGTGTTGGTTTCTTCGTGGTGTAGGTTAGGGTTTGCGGA GGTTGATTACCCTTGGGGCAAACCTATCTACTGCTGCCGGCCGGTTGTCCACCATAGGAAGGATATCGTGTTGCTGTTCCCGGACATTGTTGAAGAAGAT GGTGTTAATGTCATTGTTGCCCTCCCTCCGGCCCAGGTGCGCAAGTTTGGTTCGCTTTTCGATGCGGTTTTATCGTTTTTGGTTAACCTTTGA
AA sequence Show only first row Show all	>Lus10004481 pacid=23169715 polypeptide=Lus10004481 locus=Lus10004481.g ID=Lus10004481.BGIv1.0 annot-version=v1.0 MGEVDHGQKIVDDLRVEIKDVCYVYPSEPMDRTSMFMSNIDQVLNFDVQTVHFFAASRDFPPRLVTQTLKEALGKVLVPYSFLAGRLNTDGKTGRLEFDC NGKGVGFVAAESARSVDEIGDLSYPNRAFGQLVAQTVHNLLDRTAAPCRPPSDDDEYDHPLAIFQVTSFRCGGFAIGLSINHTTFDGISTRLFLDNLAAV AGGKPLLVPPCNDRRLLAARSPPRVTYPHPERRQLNASAAQVFETTEEDLDFKIFRLTSSHVSLLKQKARNPHATSPSPVSGFYAVAALIWRCKALSYSP LGGGGDQDRVSTILYAVNIRHKLLTPPLAASYTGNAALTAYARAKCSEILEAPLWRMAEMAAEGGKMITEEYVRSVIDWGEVYGRGFPHGEVLVSSWWRL GFAEVDYPWGKPIYSCPVVHHRKDVVLVFPDSVDEDGVNVIVALPPHQMRKFGSDFNAPCSLFAAGGGEEDRVSTILYAVNIRHKLLTPPLVASYTGNAV LTAYASAKCSKIPEAPLWRMAEMAAEGGKRITEEYARSVIDWGEVYGRGFPQGEVLVSSWCRLGFAEVDYPWGKPIYCCRPVVHHRKDIVLLFPDIVEED GVNVIVALPPAQVRKFGSLFDAVLSFLVNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10004481 [exp]	0	1

Compare expression of checked genes

Lus10004481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.