Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56540 111 / 3e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G66090 106 / 5e-26 Disease resistance protein (TIR-NBS class) (.1) AT1G63880 105 / 2e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 105 / 2e-25 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G36930 104 / 6e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G64070 102 / 2e-24 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63730 102 / 3e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16990 101 / 5e-24 RLM3 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative AT1G27180 101 / 6e-24 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G04220 101 / 7e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029919 [exp] 299 / 6e-103 AT5G36930 105 / 5e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029921 [exp] 163 / 1e-47 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006929 [exp] 149 / 1e-43 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10026845 [exp] 149 / 2e-43 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014671 [exp] 146 / 2e-42 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041606 [exp] 139 / 3e-39 AT5G36930 140 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10027920 [exp] 139 / 4e-39 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006928 [exp] 137 / 1e-36 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030498 [exp] 124 / 1e-34 AT5G36930 115 / 2e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070436 [exp] 110 / 9e-30 AT2G20142 160 / 7e-49 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.005G062700 [exp] 110 / 2e-29 AT4G16990 149 / 1e-41 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative Potri.019G069200 [exp] 117 / 3e-29 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069866 [exp] 108 / 1e-28 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G001314 [exp] 108 / 3e-28 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 113 / 4e-28 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 113 / 4e-28 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G068300 [exp] 113 / 5e-28 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.001G307300 [exp] 113 / 5e-28 AT5G17680 597 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.003G200500 [exp] 113 / 6e-28 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10004482 pacid=23169699 polypeptide=Lus10004482 locus=Lus10004482.g ID=Lus10004482.BGIv1.0 annot-version=v1.0 ATGAAAACATTATCTATTTTACTTACTGTTGCATTTTTTCACCTTCTACTCTTTCTATCGTGTATCCCTTCCTCTTACTACTCAACCACCACCACCCCCC CTCTCGCTTTTTTCCTTCAGTTAATCGGAATAACAGTTCCATCAAGGAGTACTCTAATACCGATTACTACTTCCGCCGACGAAGCTGAACGATTACAGCT GCGACGATCCTCCTACGACGTGTTCATTTCCTTCAGAGGTCCCGATGTGCGGCACACGTTCAAGGAACACCTCCGCGCTGCCCTCCAGCGAAAGCGTCTC ACAGTGTTCTGCGACGACGCCCAGGAACTTCGCGGCGAAATAGTACATGAGTCCATCCTCCGCGCCATCGAGCGATCCACCTGCCACGTGGTCGTGCTCT CGAAGAATTTTGCTTCCTCCACATACTGCCTGGATGAGCTGGTCAAGATCATGAACTGCTCTACCGCCGTTGGCAGAAGAAGCTGCTGTATGCCGGTTTT CCACGGAATTCCGGCGGCTGATCCCTCCGGAGGTTGCTTCAAGAAAGACTTGGAGGTCCACATGAAGAGTTTCAGTTATGAAAGAGTGCAAGGCTGGCTC CGGGCACTTCGTTGGATACCCAGCGTAGGCGGCTGGCGTTTCAACGGCAAAGAGTCTGAAGCGATATTGGTGGAGACGATTGCCACAAGAATCCAGGAGA AGGTACTGGAGCTAGCAGCTGATTCCGCCATTGTCACCCTCGACGCCGGGGACAAAACGCGCGATAGGCCGCCGCCAAGTAGCGGAAACTTAGATGGAGA TGGTACATTGAAAGAGATCTTGGTGATAGATTAA
AA sequence Show only first row Show all	>Lus10004482 pacid=23169699 polypeptide=Lus10004482 locus=Lus10004482.g ID=Lus10004482.BGIv1.0 annot-version=v1.0 MKTLSILLTVAFFHLLLFLSCIPSSYYSTTTTPPLAFFLQLIGITVPSRSTLIPITTSADEAERLQLRRSSYDVFISFRGPDVRHTFKEHLRAALQRKRL TVFCDDAQELRGEIVHESILRAIERSTCHVVVLSKNFASSTYCLDELVKIMNCSTAVGRRSCCMPVFHGIPAADPSGGCFKKDLEVHMKSFSYERVQGWL RALRWIPSVGGWRFNGKESEAILVETIATRIQEKVLELAADSAIVTLDAGDKTRDRPPPSSGNLDGDGTLKEILVID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56540			Disease resistance protein (TI...		Lus10004482 [exp]	0	1

Compare expression of checked genes

Lus10004482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.