Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27600 1087 / 0 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 1010 / 0 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 463 / 1e-154 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 458 / 1e-152 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 447 / 2e-148 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 439 / 2e-145 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT2G47240 437 / 8e-145 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT2G04350 358 / 1e-113 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 353 / 7e-112 LACS9 long chain acyl-CoA synthetase 9 (.1) AT4G14070 185 / 2e-49 AAE15 acyl-activating enzyme 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029918 [exp] 1365 / 0 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 1014 / 0 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 1004 / 0 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10021021 [exp] 460 / 2e-153 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 461 / 1e-152 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 451 / 4e-150 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 417 / 7e-137 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10001830 [exp] 411 / 6e-135 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002414 [exp] 394 / 8e-128 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021300 [exp] 1170 / 0 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 1042 / 0 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.003G139700 [exp] 474 / 6e-159 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 463 / 1e-154 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 459 / 2e-153 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 387 / 4e-125 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 343 / 6e-108 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.002G084100 [exp] 342 / 2e-107 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 340 / 2e-106 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169600 [exp] 317 / 1e-99 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10004483 pacid=23169685 polypeptide=Lus10004483 locus=Lus10004483.g ID=Lus10004483.BGIv1.0 annot-version=v1.0 ATGGAATCCTCAGCTCACCGCCGCCTCGAAGCCGTTCAAGGCCACTTGCTCCTCTCCTCCTCCTCCTCCTCTGCCGATGAGGATCACTCGCTTCTCCTCC AACCTAACCTCACCGCCTCGTCGCAGTTCGTCAACAGTCAAACTTACAGCGTAAGTCTGCCAGAGAAATTGCAGACCGGAAAGTGGAACGTATACAGATC TGTACGGTCGCCGATGAAGATCGTTAGCAGGTTGCCTGAGCATCCAGAGATTGAGACATTGCATGATAACTTTGTACATGGTGTTCGGAATTTTCGTGAT TGCAAGTACTTGGGGACACGAGTTCGACAGGATGGAAGAGTCGGAGAATACATGTGGATGACATATGGAGAAGCAGCTATTGCAAGGGAAGCCATAGGTT CTGGCCTTCGGTATCAAGGTTTGGATAAGGGAGCTTGTATTGGAATTTACTTTATAAACAGACCAGAATGGCTGGTTGTGGATCACGCTTGTGCAGCATA CTCATACATCTCAGTTCCCTTATATGATACTCTTGGTCCAGATGCAGTTAAATTTGTAGTAAATCATGCTGATGTCCAAGCCATATTTTGTAACTCTGAG ACCTTGAACACCCTCCTGACATTCGTATCTGAGATCCCATCAGTTAGGCTCATTGTGGTAGTTGGCGGTGTTGATGAGCACTTACCGACCTTGCCTTCAT CTGGAGTCAAGCTCATATCTTATCTGAAATTGATTGGTGAGGGCCGCAGTAATGTACAGCCTTTCATGCCTCCTAAATCTGAAGATGTTGCGACGATATG CTATACCAGTGGTACAACTGGGACACCAAAGGGAGTTGTCTTGACACATGGAAACTTGATTTCAAGCCTTGCCGGTGCCAGCATGTCTATCAAATTCGAT TCTTCAGATAGCTATTTATCTTATCTTCCTTTGGCACACATCTATGAAAGAACCAACCAGATATCGTCAGTATACAATGGTTGTGCTGTTGGCTTCTATC AGGGGGACAATTTGAAACTGATGGATGATTTGGCTGTTCTAAAACCAACAATATTCTGCAGTGTCCCTCGGTTGTATAACCGCATATATGACGGGATAAC AACGGCCGTGAAGACTTCTGGAGCATTAAAGGGGAGGTTGTTTAATGCTGCCTTCAACTCAAAGAAGCAAGCAATAATGAGAGGCCGAAATTCATCACCA ATGTGGGATAGACTAGTCTTTAACAAAATAAAGGCTAAGCTTGGAGGGCGGGTTCGGTTTATGGGATCAGGTGCTTCACCTTTGTCTCCTGATGTAATGG ACTTCTTGAGAGTGTGCTTCGGCTGTCAAGTGCTCGAGGGATATGGAATGACCGAGACGTCTTGCGTCATAAGCATTATGGATGAGGGTGACAATCTCTC TGGTCATGTTGGATCCCCTAATCCTGCTTGTGAAGTAAAATTGGTGGATGTTCCTGAAATGAATTACATGTCCGAAGACCAGCCTTATCCTCGTGGCGAA ATCTGCGTCAGGGGTCCAACCATTTTCAAGGGCTACTACAAAGACGAAACCCAAACGCGAGAGGTTATAGACGAGGATGGATGGTTACACACTGGTGATA TTGGATTATGGTTGGAAGGAGGCCGTCTCAAGATTATCGACAGGAAGAAGAACATCTTCAAGCTGGCACAGGGCGAATACATAGCTCCTGAGAAAATCGA GAATGTCTACACCAAAAGCCGATTCGTTGCCCAGTGTTTCATATACGGTGACAGCTTCAACTCGTCCTTAGTTGCTATAGTCTCCGTTGACCCAGATGTG TTGACAAACTGGGCCACTTCTCAAGGAATCAAGACTGACGATCTAGGCCAGCTGTGTAACGATCCAAGAGCGAAAGCTGCTGTCCTGGCTGACATGGATT CAATAGGAAGGGAAGCACAGTTGAGAGGTTTCGAATTCGCCAAGGCCATAACTCTGGTGCCAGAACCATTCACCCTGGAGAATGGCCTGCTAACTCCAAC ATTCAAGATCAAGAGGCCTCAAGCAAAGGACTATTTCGCTAAAGCAATCTCCAACATGTACGCCGAGCTATCTTCATCCGACCGTCAAACTCCCACCATC TCAAAGCTGTAA
AA sequence Show only first row Show all	>Lus10004483 pacid=23169685 polypeptide=Lus10004483 locus=Lus10004483.g ID=Lus10004483.BGIv1.0 annot-version=v1.0 MESSAHRRLEAVQGHLLLSSSSSSADEDHSLLLQPNLTASSQFVNSQTYSVSLPEKLQTGKWNVYRSVRSPMKIVSRLPEHPEIETLHDNFVHGVRNFRD CKYLGTRVRQDGRVGEYMWMTYGEAAIAREAIGSGLRYQGLDKGACIGIYFINRPEWLVVDHACAAYSYISVPLYDTLGPDAVKFVVNHADVQAIFCNSE TLNTLLTFVSEIPSVRLIVVVGGVDEHLPTLPSSGVKLISYLKLIGEGRSNVQPFMPPKSEDVATICYTSGTTGTPKGVVLTHGNLISSLAGASMSIKFD SSDSYLSYLPLAHIYERTNQISSVYNGCAVGFYQGDNLKLMDDLAVLKPTIFCSVPRLYNRIYDGITTAVKTSGALKGRLFNAAFNSKKQAIMRGRNSSP MWDRLVFNKIKAKLGGRVRFMGSGASPLSPDVMDFLRVCFGCQVLEGYGMTETSCVISIMDEGDNLSGHVGSPNPACEVKLVDVPEMNYMSEDQPYPRGE ICVRGPTIFKGYYKDETQTREVIDEDGWLHTGDIGLWLEGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYTKSRFVAQCFIYGDSFNSSLVAIVSVDPDV LTNWATSQGIKTDDLGQLCNDPRAKAAVLADMDSIGREAQLRGFEFAKAITLVPEPFTLENGLLTPTFKIKRPQAKDYFAKAISNMYAELSSSDRQTPTI SKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10004483 [exp]	0	1
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	16.3	0.7950
AT3G10430			F-box and associated interacti...		Lus10031020 [exp]	23.0	0.7996
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	37.5	0.8125
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	42.4	0.8305
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	54.4	0.8189
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030169 [exp]	54.8	0.8007
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	57.4	0.8103
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	60.0	0.8023
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10005285 [exp]	64.5	0.7994
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	76.5	0.8090

Compare expression of checked genes

Lus10004483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.