Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09010 1160 / 0 glycoside hydrolase family 2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029917 [exp] 1623 / 0 AT1G09010 1407 / 0.0 glycoside hydrolase family 2 protein (.1) Lus10000159 [exp] 385 / 1e-126 AT1G09010 361 / 1e-117 glycoside hydrolase family 2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021200 [exp] 1313 / 0 AT1G09010 1457 / 0.0 glycoside hydrolase family 2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02836 [flax] [poplar] Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain CL0159 [flax] [poplar] E-set PF00703 [flax] [poplar] Glyco_hydro_2 Glycosyl hydrolases family 2 CL0202 [flax] [poplar] GBD PF02837 [flax] [poplar] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain
Representative CDS sequence Show only first row Show all	>Lus10004484 pacid=23169680 polypeptide=Lus10004484 locus=Lus10004484.g ID=Lus10004484.BGIv1.0 annot-version=v1.0 ATGGCGATGGAAATTGGAAGAAAGGTGCTCGATTCAGGGTGGATAGCAGCTAGATCGACGGAGGTCAAGCTTACGGGGACTCAGCTCACCACAACTAACC CTCCTGCTATCGGGCCTAAATCGCCATGGATGGAAGCTGTGGTTCCCGGAAGTGTCTTGGCAACCCTTGTGAAGAACAAAGTGGTGCCTGATCCATTTTA CGGGCTCGAGAACGAGGCGATCCTCGATATAGCCGATTCGGGGAGGGAGCACTACACATTCTGGTTCTTCACTACCTTTGAGTGTAAGCTGTCAGAGAAT CAGTACCTTGATCTGAATTTCCGCGGGGTCAATTACTCTGCTGAAGTGTATCTCAATGGACACCATATGGCCTTGCCTAAAGGGATGTTCAGGCGGCATT CTCTTGACGCTACGAAAATTCTTAGTTCCAAGGGGACGAACTTGCTAGCTGTTCTAGTTCACCCGCCTGATCATCCTGGGAAGATCCCTCCTGAAGGCGG CCAGGGTGGCGATCATGAGATTGGAAAAGATGTCACCACACAATATGTTGAGGGATGGGATTGGATTTGTCCCATAAGGGATAGGAATACCGGCATTTGG GACGAGGTATCGATATCGATTACAGGGCCAGTGAAGATAATAGATTCACACTTGGTCTCAACTTTCTACGACAACTACACGAGAGTGTATCTTCACGCTG CGGTGGAATTGGAAAACAGAAGCTCTTCCGTGGCTGGATGTAACGTAAACATTCAAGTGACGACAGACCTCGAGGGAGGTGTTTGCCTCGTGGAGCATCT TCAGACGCAGTTCTTGGCCATAGCGGCTGGTAAACGCGTTCAATACTCATTTCCCGAGCTCTTCTTCTACAAACCCAACTTATGGTGGCCGAATGGTATG GGAAAGCAGGCGCTCTACAACGTCACCATTACAGCCAATCTAGAAGGACAAGGAGAATCAGACACTTGGAACCAGCTCTTTGGATTCCGTAAAATCGAGA GTACTATCGACAGCTCAACCGGTGGAAGGTTGTTCAAGGTCAATGGGCAGCCTATTTTCATCAGAGGGGGTAACTGGATAGTCTCTGATGGGTTACTACG GCTTTCTCGAAAGCGTTATCAGACAGACATCAAGTTCCATGCTGATATGAACTTCAACATGATCCGTTGCTGGGGTGGCGGGTTGGCGGAGAGGCCGGAT TTCTATCATTTCTGCGACGTATATGGCATACTAGTGTGGCAGGAGTTTTGGATTGCAGGAGATGTGGATGGAAGAGGCGTCCCAGTTTCGAACCCGGACG GTCCGTTGGACCATGATCTCTTCCTGTTTTGTGCAAGGGACACTGTCAAGCTACTAAGGAACCATCCGAGTCTCACTCTTTGGGTAGGCGGAAATGAACA AGTTCCTCCACCTGACATCAACAATGCTTTAAAAAAGGACCTGCAACTCATGCCCGAGTTTCAATCCTCTGAGATAAAAACCCCGTCTGAACATGATGAT TCGCCCTCCGTGTCACAAAGCCTCTCCGACTATCTCGATGGCACGCGAGTCTATGTGCAAGGATCAATGTGGGACGGCTTTGCTGATGGGAAAGGGAACT TCACAGATGGCCCTTACGAAATTCAAAACCCGGAAAGCTTCTTCAAGGACGACTTCTACAAGTATGGTTTCAACCCGGAGGTTGGCTCTGTAGGAATGCC AGTTGCTGCTACCATCAGAGCGACAATGCCTCCGGAAGGGTGGCTAATCCCATTGTTCAACAAGCAAGCTGATGGTTACATCGAAGAAGTTCCAAACCCC ATATGGAACTACCATAAGTACATTCCTTATTCCAAACCCAGCAATAAGGTCCATGACCAAATACTGCTATACAGTGTCCCGACAGACCTTGATGATTTTT GTCTCAAGGCTCAACTTGTAAACTATATCCAATATAGAGCATTGCTGGGTGCAGCTAAACCTCGCCACTTATTTCATAGAGAAGCATCAGTCTGGGACCT CGATGGTACGTGCCCGTACTACAAAGTCCACAAAGATCTCTCGTTTCCCTCGAAGAAGACCACACGAGTAGCCGAGATGAAGTACCCGAGTTCCAAGAAT CCGAAACCGGCATTCTTCCTCTTACTGAAACTCTACAACACGTCGGACTACAAGATCCTTTCCAGGAACTTCTACTGGCTCCATCTTCCCGGCAGCGACT ACACCTCGCTCCAGGACCCATTCCGGAAGAAGAAGATCCCTCTCAAGCTCACAACGCAGACTTTCATCTCCGGGAGAGCCTACGAAATGGAAGTCCTAGT CCAGAACAAGTCCTCCTCCTCGACGAGTTCGACTCATAAGAACAACTTTGTCGTAGCTGCTGCTGATGATGGCGCTGATTATGATTCGAACGCGGAACTG CAGCTTCGTGTACTGGATGGAAACGGTAAAAAAGATGGTTTGTTTCGGACATTGTCCAGAATGTTTGCAGCAACAGAGGGATCGTCTTCTTCTTCGAAGG TTTCATCCGAAGTGAATGGGAGTAACGTAGGAGTTGCATTCTTCCTACAGTTCTCAGTCCACGCTGAGAAATCGCGATACGAAGAAGGCGAAGACACGAG GATTCTGCCTGTACATTACTCGGATAACTACTTCTCGCTCGTCCCAGGAGAGGAGATGACCGTTAAAATTTCGTTCGAGGTTCCTCCTGGTGTTACTCCA AGGGTGACTCTCCATGGCTGGAACTACCCTGGTGGCCATACAGTTCACCATTGA
AA sequence Show only first row Show all	>Lus10004484 pacid=23169680 polypeptide=Lus10004484 locus=Lus10004484.g ID=Lus10004484.BGIv1.0 annot-version=v1.0 MAMEIGRKVLDSGWIAARSTEVKLTGTQLTTTNPPAIGPKSPWMEAVVPGSVLATLVKNKVVPDPFYGLENEAILDIADSGREHYTFWFFTTFECKLSEN QYLDLNFRGVNYSAEVYLNGHHMALPKGMFRRHSLDATKILSSKGTNLLAVLVHPPDHPGKIPPEGGQGGDHEIGKDVTTQYVEGWDWICPIRDRNTGIW DEVSISITGPVKIIDSHLVSTFYDNYTRVYLHAAVELENRSSSVAGCNVNIQVTTDLEGGVCLVEHLQTQFLAIAAGKRVQYSFPELFFYKPNLWWPNGM GKQALYNVTITANLEGQGESDTWNQLFGFRKIESTIDSSTGGRLFKVNGQPIFIRGGNWIVSDGLLRLSRKRYQTDIKFHADMNFNMIRCWGGGLAERPD FYHFCDVYGILVWQEFWIAGDVDGRGVPVSNPDGPLDHDLFLFCARDTVKLLRNHPSLTLWVGGNEQVPPPDINNALKKDLQLMPEFQSSEIKTPSEHDD SPSVSQSLSDYLDGTRVYVQGSMWDGFADGKGNFTDGPYEIQNPESFFKDDFYKYGFNPEVGSVGMPVAATIRATMPPEGWLIPLFNKQADGYIEEVPNP IWNYHKYIPYSKPSNKVHDQILLYSVPTDLDDFCLKAQLVNYIQYRALLGAAKPRHLFHREASVWDLDGTCPYYKVHKDLSFPSKKTTRVAEMKYPSSKN PKPAFFLLLKLYNTSDYKILSRNFYWLHLPGSDYTSLQDPFRKKKIPLKLTTQTFISGRAYEMEVLVQNKSSSSTSSTHKNNFVVAAADDGADYDSNAEL QLRVLDGNGKKDGLFRTLSRMFAATEGSSSSSKVSSEVNGSNVGVAFFLQFSVHAEKSRYEEGEDTRILPVHYSDNYFSLVPGEEMTVKISFEVPPGVTP RVTLHGWNYPGGHTVHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09010			glycoside hydrolase family 2 p...		Lus10004484 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	9.4	0.8677
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	11.0	0.8716
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10000661 [exp]	11.9	0.8228
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	13.0	0.8528
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	13.1	0.8594
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	13.9	0.8514
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	19.6	0.8186
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	21.8	0.8546
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	22.2	0.8619
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10036604 [exp]	25.0	0.8345

Compare expression of checked genes

Lus10004484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.