Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05345 288 / 8e-99 Chaperone DnaJ-domain superfamily protein (.1) AT5G23240 64 / 1e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G42750 62 / 3e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G22360 53 / 7e-08 DNAJ heat shock family protein (.1) AT4G39960 51 / 3e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 49 / 1e-06 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G72070 46 / 3e-06 Chaperone DnaJ-domain superfamily protein (.1) AT1G80920 44 / 2e-05 AtToc12, AtJ8, J8 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) AT3G08970 44 / 0.0001 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT5G59610 42 / 0.0002 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029916 [exp] 441 / 4e-159 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10029928 [exp] 364 / 4e-129 AT3G05345 205 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10000158 [exp] 192 / 1e-62 AT3G05345 102 / 7e-28 Chaperone DnaJ-domain superfamily protein (.1) Lus10040990 [exp] 69 / 5e-13 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008768 [exp] 66 / 2e-12 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022246 [exp] 64 / 7e-12 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020749 [exp] 63 / 3e-11 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10000631 [exp] 49 / 2e-06 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 47 / 7e-06 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021000 [exp] 297 / 7e-102 AT3G05345 288 / 1e-98 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G031466 [exp] 67 / 2e-14 AT3G05345 68 / 2e-15 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G347600 [exp] 67 / 1e-12 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G143400 [exp] 64 / 7e-12 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G072600 [exp] 63 / 2e-11 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G031800 [exp] 50 / 4e-07 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 48 / 3e-06 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 47 / 6e-06 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 45 / 2e-05 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G113400 [exp] 44 / 2e-05 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10004485 pacid=23169693 polypeptide=Lus10004485 locus=Lus10004485.g ID=Lus10004485.BGIv1.0 annot-version=v1.0 ATGGCGACCTTAGCTTTCTGCTATTCTTCTATCCCACCAATTCTTCCTCCGATTCACAGTGCCAATTTCTGGAATCCCACTCCCGGAAACACGATTCGAT TTAATCGGAGCTCCAAATTCACACTCCGCTGCACCGCAGGCGATGGTTCTTCTTCTTCGCCACACGCCGTTCTCGGCGTCAACCCAGGATGCTCAGCCAC CGAGCTCAAAGCCGCGTTCCGGGCGAAAGTGAAGCAGTTCCATCCCGACGTCATCGGAGAGAAAGGATCCGATGTCATGATTCGCCGCGTAATTCGAGCG TATGAGATCTTATCCGATTATACACGGTCAGAGATCATCGAAAGAGAATTTATGGATCCATTTGAGAAACCAGAGTGTGAAGCTTACGATTTATTCGTCA ATGAAGTTTGCTGCATTGGCAGAGGGTGTCCCTATTCATGCGTAGAACGAGCGCCACAAGCCTTCACATTTTCACCATTCGGAACAGCCAGGGTCAAATC TCAAGGCTACGGTGGAGACTACCAAGTTCAGGTGGCAGCCGGACAGTGTCCTAGGAGCTGCATTCATTATGTTACACCGTCACAGAGGATCATTCTCGAG GAGTCATTGGACAGCATCCTCAATGCCCACTATGACTGCTCAGCAGAGTCCGAACTGCTGTATTCGCTGATCTTGAAAGCAAGGTTCGAGAACAACCGGT TCCAGAAGCCGAAGAACAAGGAACCAACGACGTCGACGCAGCATGTAGATTGGTATTGA
AA sequence Show only first row Show all	>Lus10004485 pacid=23169693 polypeptide=Lus10004485 locus=Lus10004485.g ID=Lus10004485.BGIv1.0 annot-version=v1.0 MATLAFCYSSIPPILPPIHSANFWNPTPGNTIRFNRSSKFTLRCTAGDGSSSSPHAVLGVNPGCSATELKAAFRAKVKQFHPDVIGEKGSDVMIRRVIRA YEILSDYTRSEIIEREFMDPFEKPECEAYDLFVNEVCCIGRGCPYSCVERAPQAFTFSPFGTARVKSQGYGGDYQVQVAAGQCPRSCIHYVTPSQRIILE ESLDSILNAHYDCSAESELLYSLILKARFENNRFQKPKNKEPTTSTQHVDWY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	0	1
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	1.4	0.9172
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	2.0	0.9082
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	3.7	0.8338
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10018803 [exp]	5.5	0.8255
AT5G58950			Protein kinase superfamily pro...		Lus10015436 [exp]	7.7	0.7841
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	8.1	0.8704
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	8.5	0.8656
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	8.8	0.8211
AT5G61670			unknown protein		Lus10016713 [exp]	8.9	0.8551
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	9.9	0.8047

Compare expression of checked genes

Lus10004485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.