Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27560 250 / 5e-82 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029915 [exp] 320 / 3e-109 AT5G27560 429 / 4e-151 Domain of unknown function (DUF1995) (.1) Lus10029929 [exp] 321 / 4e-109 AT5G27560 425 / 5e-149 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020800 [exp] 276 / 6e-92 AT5G27560 436 / 4e-154 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10004486 pacid=23169725 polypeptide=Lus10004486 locus=Lus10004486.g ID=Lus10004486.BGIv1.0 annot-version=v1.0 ATGCATATCCCCCAGGGAGCGGGAACTAAATTTGGGAGTACTTTCAGGCAGTTGAAGCAGCAAAGCTTGCTCCTATCCATGGCTGCTTCAATCCCAAGCT GCTCATTTCTCCACAACAACTTATCACAACCATCTGCATCCCACAGCACTTGCTCAACCACAGCCACTCCTTTCACCTTATCTTTCCTATTCTCATCAGC CACTAGTAGGAAAAGCTACGGCGGAGCTTCGTCATCAAGAATCTCCGCCAAGTTCGAGAAATTCCAGGGCGAAGAGAATCCACAATCGCAAACTGAACAG GAAGAATATGTTACAGGTGGAGCTTCTGATTCCGCAGCTAATAGGGTTAAAGCCATATATCCAGATGCTGGTGCTGCTGCAATGCTCAAGTATAGATGGG AAGAAGCAACCTTTGGATTCGCGAGCTTAGGTGTGGTTATGGTTCTTCCAGACTATCAAATGCTGTCATCTGTTGAGAAAATTGCAGCTAGTCTCGCAGA CGATCCGCCAAGGCCGCTCATCATGTGGAATCCTCGCCTCATTAGCGAGGGCGTTGGAGTCGGGATCAACGTTTGCAACCTTAGGCATTACTTCCTGAGC ACTTTCACCACGGTTTACTCAATGAAACCTCTGCCAGAAGGTGCTGTCTTTAGATTGTGGAAGGTGTTCTTGGACGACAAAGAAAGGCCAAACAGATACC TTCTTGCAAAGGAGTTCATTCAGCAGCCTGACTACGAAAAAATCGAGATAATATTTGGTAATGGCCAAGAAGAGTCTGAGCAAGGTCCATCACTCTTCAA CAGAGCTGCTAGCCTTTTTTCTTCCATAAACGAATTCATGAGAGTCATATCAAAGTAA
AA sequence Show only first row Show all	>Lus10004486 pacid=23169725 polypeptide=Lus10004486 locus=Lus10004486.g ID=Lus10004486.BGIv1.0 annot-version=v1.0 MHIPQGAGTKFGSTFRQLKQQSLLLSMAASIPSCSFLHNNLSQPSASHSTCSTTATPFTLSFLFSSATSRKSYGGASSSRISAKFEKFQGEENPQSQTEQ EEYVTGGASDSAANRVKAIYPDAGAAAMLKYRWEEATFGFASLGVVMVLPDYQMLSSVEKIAASLADDPPRPLIMWNPRLISEGVGVGINVCNLRHYFLS TFTTVYSMKPLPEGAVFRLWKVFLDDKERPNRYLLAKEFIQQPDYEKIEIIFGNGQEESEQGPSLFNRAASLFSSINEFMRVISK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	0	1
AT1G53250			unknown protein		Lus10042840 [exp]	3.5	0.9040
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	4.6	0.9042
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	5.9	0.8994
					Lus10006129 [exp]	6.0	0.8971
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	6.0	0.9223
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10024735 [exp]	7.5	0.8819
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	7.8	0.8472
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10027068 [exp]	8.0	0.9163
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	9.8	0.8342
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	10.8	0.8944

Compare expression of checked genes

Lus10004486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.