Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27550 797 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 506 / 1e-163 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 491 / 3e-159 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27000 317 / 2e-94 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 315 / 1e-93 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G41310 312 / 6e-93 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 310 / 9e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 303 / 8e-89 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G18410 300 / 2e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 294 / 1e-85 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029914 [exp] 1306 / 0 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005582 [exp] 492 / 4e-159 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 489 / 1e-157 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035954 [exp] 468 / 1e-150 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 443 / 6e-141 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029865 [exp] 305 / 1e-89 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 300 / 4e-87 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 297 / 2e-86 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 295 / 2e-86 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020700 [exp] 838 / 0 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030271 [exp] 822 / 0 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 505 / 2e-163 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 490 / 3e-157 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.002G110600 [exp] 480 / 3e-155 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G031500 [exp] 397 / 1e-130 AT5G27550 378 / 7e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G021100 [exp] 311 / 5e-92 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 311 / 7e-92 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.001G467600 [exp] 309 / 1e-90 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 308 / 2e-90 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10004487 pacid=23169714 polypeptide=Lus10004487 locus=Lus10004487.g ID=Lus10004487.BGIv1.0 annot-version=v1.0 ATGGAAGATCCAGTAGTGGAAACGGTCCTCGAAAACAGTTGTGGTGCTGTTGACGCTCTCCACATCGTCTCAGAGCCTGCTTCTCTGTCCACTTCCTCAG TTGCCCCTGAGCTGGTGGAGGAAACCACTACTTCAATGGATGAGGGGAACGTATCAAGTGGGAGTAAGGAGTCGCCATCTCAGGAGCCTGCACTGCCTAT ATTGCAGAAAATCACCAAGTTGAACAGTAATATTCAGAATTTGAAGAATGATCATGCAATTCTCAAGGATGAAGTTAAAAGTGCGCTTCAGCTACTTGGT AATGAAAATGAACATCTAAAGAAGAAGTTTGTGCAAGAGTCAACTGAAAGGAAGAGGCTCTACAACGAAATGATAGAGCTTAAAGGCAATATTAGAGTGT TCTGCAGATGTAGACCGATAAACCAATCCGAGCTTGAGAAAGGCTCCAATAGTGTGGTCGAATTCGATTCCTCCCAAGATAATGAGCTGCAGATTCTTTC ATCCGATTCCTCGAAAAAGCAGTTCAAGTTTGATCATGTCTTTAAACCAGATGACAACCAAGAGGCTGTATTTGCAGAAACTAAACCTATTGTTACCTCA GTGCTGGACGGCTACAATGTCTGCATATTTGCCTATGGCCAAACTGGAACTGGCAAGACATTTACAATGGAGGGAACACTTGAAAACAGAGGAGTTAACT ACAGAACTCTCAAGGAGCTCTTTCGGATTTCTGAAGAACGAAAGTGTTATATGAAATATGAGTTATACGTCAGCATGTTGGAGGTTTACAATGAGAAGCT AAGAGACCTTCTAGTCGAAAACTCCAAGGAAAATTCGAAACGGTTGGATATTAAGCAAGCTGCTGATGGAACTCAAGAAGTCCCCGGACTCATTGAATCT CATGTCTCTAGCACTGAAGAAGTATGGAAGCTCCTCAAGTCTGGAAACTGCATTCGATCTGTCGGGCCCACAAGTGCCAACGAGCAAAGCAGCCGCTCTC ACTGCTTGTTACGAGTGACGGTCAAAGGAGAGAATTTGATCAATGGACAGAAAACAAAGAGCCACCTTTGGCTGGTGGACTTAGCTGGAAGTGAGCGAGT AGGGAAGATTGAAGTTGAAGGTGAAAGGCTGAAGGAATCCCAGTTCATAAACAAGTCTCTCTCAGCCTTAGGCGACGTTATCTCTGCTCTTGCATCGAAA ACAAGCCACATTCCATACAGGAACTCGAAGCTTACTCATATGCTGCAAAGCTCTCTAGGTGAGGAGGGTTCAAGATTGTTTCAGCGGATTCGAGCTATCA TTATGCCGATTGAAGAAGAGCTAACAAATTGGGATTTGATGTTTGATGTAGGTGGGGATTGCAAGACTTTAATGTTTGTCCAGATAAGTCCTAGCTCCAG TGACCTTGGGGAGACCCTTTGTTCACTGAATTTCGCTACTCGAGTTCGAGGAATCGAATCTGGCCCTGCTCGTAAACATGCTGATCTTAATGAGCTCCAC AAGTACAAGCAAATGGCAGACAAAATGAAACATGATGAGAAGGAAACTAAGAAGTTGCAAGATACTGTCCAGTCTTTGCAGCTACGCCTTACTGCCAGAG ACACCATGTTCAGAAGTCTCCAAGAGAAGGTCAGAGACTTGGAGAACCAGTTGGAGGAAGAGAGGAAAACACGAATAAAGCAAGAAAACCGAGCTTTAGC TGCTTCAGTTCGATCTTCATCTCTCTTCTCGAAGCAACAAACATCAACGGAGAACAACACCAGTATCAGCAAACCACCGTTGGCTCCGCCGACGAAGCTG AGAATGCCGCTCCGTAGAATCACCAACTTCATGCCCCAGCAACAACCTCCTCCCGCCGCCGCCGTCAAAAGACCATCCTCTGGCGCCGCCGCGTGGAAAA GGAAGGAAAACAACGTCGTCAACATCAACAACAACAACAACAATAACAATGCAAGGAATCTGATGAAACCGAGGAGGAACTCCGTTGCAGTGAGACCACC ACCAGTTCAATCTCAGCAGCCGTCGAATTCGGGCCAAGTAGTTCGTCAGCCGAGGAGGCGGGTCTCTGTTGCCACGTACATCCCGGAACCAAGCATGATC TCTACTCCCCGAGTACAACAATCATCGCAGCAATTGATCAGGGGAGGTGCGAGGAGGGGGAGGTATTCGAGCTTGTTTTCGCCGTTGCCGGAGTCGGAGA TTCTAAGGACACCTGCGGCGGGGAGGTTTAATAGTAGTAGTAGTAAGTTCATGGGGAGTCCTCCGGTGGTTCCTGGTTCGTGGAAGCCGAAGCATCCGAC GGTGGTTGCTTTGCAGAAGAAGACTCTGGTGTGGAGTCCTTTGAGAGGGATGTTGAAGAACGTCGGCGCCGGAGGAGGAAGGGCTAGTCGGCCGTCGTTC ATTGCTGCATTGAATCAACGGAACTGA
AA sequence Show only first row Show all	>Lus10004487 pacid=23169714 polypeptide=Lus10004487 locus=Lus10004487.g ID=Lus10004487.BGIv1.0 annot-version=v1.0 MEDPVVETVLENSCGAVDALHIVSEPASLSTSSVAPELVEETTTSMDEGNVSSGSKESPSQEPALPILQKITKLNSNIQNLKNDHAILKDEVKSALQLLG NENEHLKKKFVQESTERKRLYNEMIELKGNIRVFCRCRPINQSELEKGSNSVVEFDSSQDNELQILSSDSSKKQFKFDHVFKPDDNQEAVFAETKPIVTS VLDGYNVCIFAYGQTGTGKTFTMEGTLENRGVNYRTLKELFRISEERKCYMKYELYVSMLEVYNEKLRDLLVENSKENSKRLDIKQAADGTQEVPGLIES HVSSTEEVWKLLKSGNCIRSVGPTSANEQSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVEGERLKESQFINKSLSALGDVISALASK TSHIPYRNSKLTHMLQSSLGEEGSRLFQRIRAIIMPIEEELTNWDLMFDVGGDCKTLMFVQISPSSSDLGETLCSLNFATRVRGIESGPARKHADLNELH KYKQMADKMKHDEKETKKLQDTVQSLQLRLTARDTMFRSLQEKVRDLENQLEEERKTRIKQENRALAASVRSSSLFSKQQTSTENNTSISKPPLAPPTKL RMPLRRITNFMPQQQPPPAAAVKRPSSGAAAWKRKENNVVNINNNNNNNNARNLMKPRRNSVAVRPPPVQSQQPSNSGQVVRQPRRRVSVATYIPEPSMI STPRVQQSSQQLIRGGARRGRYSSLFSPLPESEILRTPAAGRFNSSSSKFMGSPPVVPGSWKPKHPTVVALQKKTLVWSPLRGMLKNVGAGGGRASRPSF IAALNQRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	1.0	0.9840
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	1.4	0.9827
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	1.7	0.9817
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	2.8	0.9726
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	2.8	0.9816
AT3G15550			unknown protein		Lus10035906 [exp]	3.2	0.9750
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	3.5	0.9750
AT5G26910			unknown protein		Lus10037725 [exp]	4.9	0.9683
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	5.9	0.9738
AT5G23910			ATP binding microtubule motor ...		Lus10039243 [exp]	6.3	0.9718

Compare expression of checked genes

Lus10004487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.