Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05330 263 / 3e-84 ATN ,ATTAN A. THALIANA TAN1, TANGLED, cyclin family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029912 [exp] 600 / 0 AT3G05330 280 / 2e-90 A. THALIANA TAN1, TANGLED, cyclin family (.1) Lus10002423 [exp] 113 / 2e-30 AT3G05330 54 / 2e-09 A. THALIANA TAN1, TANGLED, cyclin family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033200 [exp] 333 / 8e-113 AT3G05330 335 / 1e-112 A. THALIANA TAN1, TANGLED, cyclin family (.1) Potri.013G022600 [exp] 330 / 5e-111 AT3G05330 360 / 4e-122 A. THALIANA TAN1, TANGLED, cyclin family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004488 pacid=23169687 polypeptide=Lus10004488 locus=Lus10004488.g ID=Lus10004488.BGIv1.0 annot-version=v1.0 ATGGTGGCAAGAACCCCACCAAAGCAACGGAGATTGGTTGCAGCTGCAAATCCTCTGCCTCTTAGCCCTCGTCTCATTCGTGAGACTGTAAACAAGGTAG AGAAATGCATGGCGAGGTTGCAGGAGCTGCAGTACACAGTGACCGGAGGGAACAAGGTGATATCTTCTGGTGCGAGTTTGAGTCCCAGGAGTACTAGAGG CTACTTGAGGACCAGTTTGAGATGCAAGCAGGAATCTTTGAGGATAAAGAGCTCTGCATCGAAGAAATCCCCCATTGGGAAGTTGCCACAAGCTTCCATA GGGGAATGGAGGAGGATGTCGTTACCAGCAATGTTGCTAGGGGAAACCATGGGGGAAATCTTGCAAGCAAGCCAATTCGCTAAAGAGATCGTTGCATCTG TCGGAGGAACCACCAATTTCACCGATGATGAACCCAAAACTCCATTGACGACGCAGCAAAGAAGAAGGCCGGAAAACAACCACTCTGCCCTCAAGTCCAA ACGCCACAGGGAGAAGAAGCAAAACCAGCCCGGGTTCGGATCGGCTCGGTCCGACTCGTCTGGTTCTCCCGTCCGGACCAACCAGCGGGTTCGGTCAAGG ATCAACTTCAGGATCTCGTCTCCGCCAAAAATTAGGTCATCGGAGAAGAAGAAAGAAAACATAATTGCTAACAGAGTTTCACCGAGGCACAGGCCATGGG CGAAGAAAGCTGTCCTGTTTCCGAATCCTGTTTTTCTCACATCATCGCCGCCGAGAATCGATCGGGAAGGGCAGGGGGCTGATCGTCGTCGTCATCCGAC GACTCCACATAAGTTTTTAATAAAGTCGCCGGTGAAAATTAGGCCTCCGTTCCCGGTGGCAATGTCACCGACGAAGGGGAGGAGTGGTGGTGTGGTGTGT AAGAAGAAGGAGTCGTCTTCGTCGCCGGCGAAGTTTGCGGCGAGTGCTGCGTCGAAGCTGAGGCGGTCGTTCTCGCCGTCGAGGATTGCTAACAGATTGG TGTCGCTATCGCCGATGAAGAGCAGGAGGAAGAAGAACGGTGATTGTTCTGGTGGTGATGCGTCGACGGCGGCGAATGAGAAGATCAGTGGACTGAAGCG GCGGCCGGTTATGGTGGCCGCTTCTTCGTTTTCTCCCCGGAGATTCTCGATTGGGGGAAGAATCTGA
AA sequence Show only first row Show all	>Lus10004488 pacid=23169687 polypeptide=Lus10004488 locus=Lus10004488.g ID=Lus10004488.BGIv1.0 annot-version=v1.0 MVARTPPKQRRLVAAANPLPLSPRLIRETVNKVEKCMARLQELQYTVTGGNKVISSGASLSPRSTRGYLRTSLRCKQESLRIKSSASKKSPIGKLPQASI GEWRRMSLPAMLLGETMGEILQASQFAKEIVASVGGTTNFTDDEPKTPLTTQQRRRPENNHSALKSKRHREKKQNQPGFGSARSDSSGSPVRTNQRVRSR INFRISSPPKIRSSEKKKENIIANRVSPRHRPWAKKAVLFPNPVFLTSSPPRIDREGQGADRRRHPTTPHKFLIKSPVKIRPPFPVAMSPTKGRSGGVVC KKKESSSSPAKFAASAASKLRRSFSPSRIANRLVSLSPMKSRRKKNGDCSGGDASTAANEKISGLKRRPVMVAASSFSPRRFSIGGRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10004488 [exp]	0	1
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	6.0	0.9582
AT5G26910			unknown protein		Lus10037725 [exp]	6.0	0.9556
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	6.8	0.9577
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	9.4	0.9545
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	11.8	0.9521
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	14.1	0.9518
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	14.3	0.9538
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	15.9	0.9525
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	16.4	0.9254
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	17.0	0.9381

Compare expression of checked genes

Lus10004488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.