Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41000 152 / 6e-47 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G28480 72 / 3e-15 DNAJ heat shock family protein (.1.2) AT5G01390 70 / 8e-15 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 71 / 1e-14 DNAJ heat shock family protein (.1) AT3G08910 70 / 2e-14 DNAJ heat shock family protein (.1) AT1G59725 69 / 5e-14 DNAJ heat shock family protein (.1) AT3G47940 67 / 3e-13 DNAJ heat shock family protein (.1) AT5G03160 67 / 4e-13 ATP58IPK homolog of mamallian P58IPK (.1) AT1G80030 66 / 5e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G22360 66 / 1e-12 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017687 [exp] 71 / 1e-14 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10003380 [exp] 70 / 3e-14 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020685 [exp] 67 / 5e-14 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10029862 [exp] 66 / 9e-14 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Lus10026498 [exp] 68 / 1e-13 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1) Lus10021961 [exp] 68 / 1e-13 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10013981 [exp] 68 / 2e-13 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10030803 [exp] 67 / 2e-13 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10005033 [exp] 67 / 2e-13 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024700 [exp] 176 / 2e-56 AT2G41000 125 / 2e-36 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.018G034600 [exp] 71 / 6e-15 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 70 / 3e-14 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.006G246700 [exp] 69 / 4e-14 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 69 / 8e-14 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 68 / 1e-13 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 68 / 2e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.017G016100 [exp] 67 / 3e-13 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 67 / 4e-13 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.016G088600 [exp] 66 / 6e-13 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10004491 pacid=23169723 polypeptide=Lus10004491 locus=Lus10004491.g ID=Lus10004491.BGIv1.0 annot-version=v1.0 ATGGATCACTACAAACTTCTGGGAGTTCACCGGAGCGCGACGAAATCGGAGATCAAGGAAGCCTTCCGGCGATTGGCCGTCCAATTCCACCCAGACAAAC ACTCCCAATCGTCCAAGCACGTCCGAGACGACGCGTCCCTCAGATTCAAGCAGATCTCCGAGGCCTACCAGATCCTTGTCGACGATCGGAAGCGTGCCGA TTACAACCTCCGTAGCGGTTCTTCAGCTTACACCGGCGGTTATCGCTACCACAACAAGAACTCTTCCTATTCCTCTTCTTATTCATCTTCCTCTTCTTAT CAATCGTCGTACAATAAATACGATGGGGGAGCGAGGCGGAGCAGCAGCGGAGTGTCGATCTTGGAGGCGGCGATCCGGTTCATGACGACGCGGGCTTTCT TGCTGAACGTGGCGTTCGCTGGATGCCTATTGGGCGGGGCGAAGATGATGGACGGCAGTGGGGAGATGCTGTGGAAGAGTTGGAACTCCGGGAAGTCGTT TGAAGAAGCTATGGAGTCGATCGAGAAAGCTAAATCGCGACGGCGGTGA
AA sequence Show only first row Show all	>Lus10004491 pacid=23169723 polypeptide=Lus10004491 locus=Lus10004491.g ID=Lus10004491.BGIv1.0 annot-version=v1.0 MDHYKLLGVHRSATKSEIKEAFRRLAVQFHPDKHSQSSKHVRDDASLRFKQISEAYQILVDDRKRADYNLRSGSSAYTGGYRYHNKNSSYSSSYSSSSSY QSSYNKYDGGARRSSSGVSILEAAIRFMTTRAFLLNVAFAGCLLGGAKMMDGSGEMLWKSWNSGKSFEEAMESIEKAKSRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41000			Chaperone DnaJ-domain superfam...		Lus10004491 [exp]	0	1
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	13.0	0.7882
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	16.0	0.7396
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	16.7	0.7780
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10021910 [exp]	19.4	0.7273
					Lus10017606 [exp]	20.3	0.7730
AT3G15760			unknown protein		Lus10005715 [exp]	24.8	0.7606
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	33.5	0.7579
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022522 [exp]	41.2	0.7270
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10013241 [exp]	42.8	0.6978
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	46.9	0.7385

Compare expression of checked genes

Lus10004491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.