Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09030 181 / 1e-59 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) AT2G47810 162 / 5e-52 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT4G14540 141 / 9e-44 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT2G38880 138 / 8e-43 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G13570 139 / 3e-42 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT3G53340 135 / 4e-41 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT5G47640 135 / 7e-41 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G37060 130 / 4e-39 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47670 124 / 1e-36 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 121 / 5e-35 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029908 [exp] 290 / 1e-102 AT1G09030 179 / 7e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Lus10036575 [exp] 159 / 1e-50 AT2G47810 177 / 2e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10041355 [exp] 159 / 2e-50 AT2G47810 176 / 7e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10033477 [exp] 143 / 3e-43 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10020899 [exp] 142 / 3e-43 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10001751 [exp] 139 / 3e-42 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 139 / 3e-42 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10015058 [exp] 138 / 4e-42 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10036637 [exp] 136 / 2e-41 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019600 [exp] 214 / 2e-72 AT1G09030 171 / 9e-56 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.005G027400 [exp] 213 / 2e-72 AT1G09030 175 / 3e-57 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.013G019500 [exp] 176 / 7e-58 AT1G09030 155 / 9e-50 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.014G132600 [exp] 169 / 2e-54 AT2G47810 186 / 9e-61 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.008G210300 [exp] 156 / 7e-50 AT2G47810 176 / 1e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.007G082200 [exp] 144 / 4e-44 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 142 / 7e-44 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G083400 [exp] 143 / 1e-43 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 140 / 4e-43 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G065300 [exp] 139 / 2e-42 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10004493 pacid=23169684 polypeptide=Lus10004493 locus=Lus10004493.g ID=Lus10004493.BGIv1.0 annot-version=v1.0 ATGGATGAGGAGCAAGATCGGCTGGTGCCCATTGCCAATGTGGGACGGATCATGAAGCAAGTACTGCCACCAACGGCCAAGATCTCTAAAGAAGCCAAGC AAACAGTGCAAGAATGTGCGACAGAATTTATAAGTTTTGTGACAAGTGAGGCAGCCGACAAGTGTCACAAGGAGAACAGAAAGACAGTTAATGGAGATGA CATCTGTTGGGCTCTGAGTAATCTAGGGTTCGATCACTATGCTGATGCCATAGTGAGGTACCTGCATAAATATAGGATGGCCGAAAGAGAGAAAGCTAGT ACCTCACAAGACCGATCCTCCAATCATCAAAGCAGACAGCCGGAGTATCTGAGGGGAGCATCCACATCATTTGAGTTTAGAGTTCTTGAGAAGGGTAATA GCAGCTCTCCTGCAAAACCATCTTGA
AA sequence Show only first row Show all	>Lus10004493 pacid=23169684 polypeptide=Lus10004493 locus=Lus10004493.g ID=Lus10004493.BGIv1.0 annot-version=v1.0 MDEEQDRLVPIANVGRIMKQVLPPTAKISKEAKQTVQECATEFISFVTSEAADKCHKENRKTVNGDDICWALSNLGFDHYADAIVRYLHKYRMAEREKAS TSQDRSSNHQSRQPEYLRGASTSFEFRVLEKGNSSSPAKPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10004493 [exp]	0	1
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10029908 [exp]	2.8	0.7583
AT3G59000			F-box/RNI-like superfamily pro...		Lus10034559 [exp]	3.7	0.8032
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	8.7	0.7940
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	18.4	0.7809
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	20.1	0.7309
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	26.5	0.7225
					Lus10002080 [exp]	27.3	0.7079
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	28.2	0.7503
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	29.4	0.7363
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	30.7	0.7458

Compare expression of checked genes

Lus10004493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.