Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05390 645 / 0 unknown protein AT4G01240 402 / 1e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 259 / 5e-82 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 258 / 1e-81 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 203 / 8e-61 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 45 / 0.0001 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 44 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 42 / 0.0006 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 42 / 0.0008 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029907 [exp] 848 / 0 AT3G05390 697 / 0.0 unknown protein Lus10010138 [exp] 407 / 4e-139 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10035135 [exp] 317 / 9e-104 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031968 [exp] 315 / 1e-102 AT4G01240 372 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 259 / 3e-82 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 254 / 3e-80 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034506 [exp] 231 / 7e-71 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 225 / 5e-69 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 226 / 2e-67 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019400 [exp] 698 / 0 AT3G05390 753 / 0.0 unknown protein Potri.002G165300 [exp] 409 / 1e-139 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G116900 [exp] 345 / 7e-115 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G083800 [exp] 258 / 3e-81 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 258 / 4e-81 AT3G05390 287 / 2e-92 unknown protein Potri.017G135100 [exp] 255 / 1e-80 AT3G05390 278 / 3e-89 unknown protein Potri.002G024800 [exp] 242 / 2e-75 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G236600 [exp] 240 / 1e-74 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 198 / 3e-59 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 196 / 4e-58 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004494 pacid=23169707 polypeptide=Lus10004494 locus=Lus10004494.g ID=Lus10004494.BGIv1.0 annot-version=v1.0 ATGGGAAGATTCTACCTCCCGAAATGTCGATTCGCGCGAATCATGGCATGGCTACAAGTGATCTTGGGAGGGCTAGTGATACTAGTGAGCTTAGCAAGTC TCTACAAGTTCTACAATGCTGGATTCTTCCTCCACAATCAAGACATCTGTCGACATTTCTACGCGGGGATCGATGTCCACAACGATGGATTCGACATTCG AGCGATCAAGGACCGCGTGGATGAAGTGCTCGACCAGATGGATAGGCTACAACGAAATCTCGAGAGGTCATCGGCCAAGACAAAATCGGAGCAGAAGAAG TTCTTAGAGGAAGAAGTAATCAAGCCTCTTTACAATGCACACATTGCCCTAAGGCAGATCAGGTTTCCGGACATGGAAGATCGGAACTTGATGATCAAGG AACCGCCTTTGATCAACGAGTTCATCACGGAAGAGATCAGGAAGTACATAACCCCAAAGTCAAACAGGATGGGGACGAAAGTCAACATTTACGGGACCGG AAGGGTGTACAACACTATCGGCCATTCATGTGCCTTGATGAAGAAAGAACTCGAAGAGTACATGGACTACGACATTGGCTCATACTGTAAAGACGACTGG AACCTCGCTCAGAGGCTCATGATCGGTGGATGCGACCCGTTGCCACGTAGGCGATGCCTGACTAGAGCCTCGAAGTGGTACAAAAGGCCATACCCGATCA ACGAATCCCTATGGAGATTGCCAGAGGATGGCAATGTGAGGTGGAGCAACTACCAATGCAGGAGCTTTACTTGCTTGTCAAGCAAGAACCCCAGAAGGGG CTACTCGAAATGCACCGGTTGTTTCGAGATGGAAAAGGAAAAGCTCAAATGGGTTACATACTCTCCCCTTCAAGTCGATTTCTTGATCAAGGACGTCTTA GCAACCAAGCCCGGCGAGGTTCGTATAGGGCTAGATTTCGGTATAGGTACCGGAACATTCGCTGCCAGGATGAAGGAACACAATGTCACCATCGTATCGA CATCACTAAACCTTGGAGCTCCGTTCAGCGAGACGATTGCGCTGAGAGGGATGATCCCTTTATACGTGACGCTGAATCAGAGGCTGCCGTTCTTCGACAA CACGATGGACTTGATCCACACGACGGTGCTGATGGATGGGTGGATGGACATGCTGCTGCTGGATTTCATACTGTATGATTGGGACAGAATCCTGAGGCCG GGAGGATTGCTGTGGATCGACAGGTTCTTCTGCAGTAGGAAGGATTTGGATGATTATATGTACATGTTCTTGCAGTTTAGATACAAGAAGCATAAGTGGG TTCTCGCCCCGAAATCTGGGGATGAGGTTTATCTGTCTGCCTTGTTGGAGAAGCCACCCAGAGCCATCTGA
AA sequence Show only first row Show all	>Lus10004494 pacid=23169707 polypeptide=Lus10004494 locus=Lus10004494.g ID=Lus10004494.BGIv1.0 annot-version=v1.0 MGRFYLPKCRFARIMAWLQVILGGLVILVSLASLYKFYNAGFFLHNQDICRHFYAGIDVHNDGFDIRAIKDRVDEVLDQMDRLQRNLERSSAKTKSEQKK FLEEEVIKPLYNAHIALRQIRFPDMEDRNLMIKEPPLINEFITEEIRKYITPKSNRMGTKVNIYGTGRVYNTIGHSCALMKKELEEYMDYDIGSYCKDDW NLAQRLMIGGCDPLPRRRCLTRASKWYKRPYPINESLWRLPEDGNVRWSNYQCRSFTCLSSKNPRRGYSKCTGCFEMEKEKLKWVTYSPLQVDFLIKDVL ATKPGEVRIGLDFGIGTGTFAARMKEHNVTIVSTSLNLGAPFSETIALRGMIPLYVTLNQRLPFFDNTMDLIHTTVLMDGWMDMLLLDFILYDWDRILRP GGLLWIDRFFCSRKDLDDYMYMFLQFRYKKHKWVLAPKSGDEVYLSALLEKPPRAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05390			unknown protein		Lus10004494 [exp]	0	1
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	1.7	0.9469
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	2.6	0.9542
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	2.8	0.9499
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	3.0	0.9213
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	4.0	0.9368
					Lus10030676 [exp]	4.2	0.9069
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	5.5	0.9189
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006696 [exp]	6.2	0.8854
AT1G13620		RGF2	root meristem growth factor 2,...		Lus10019202 [exp]	7.1	0.8764
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	8.1	0.9348

Compare expression of checked genes

Lus10004494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.