Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09040 360 / 9e-108 unknown protein AT1G09050 357 / 2e-106 unknown protein AT1G55050 305 / 4e-88 unknown protein AT2G47820 296 / 1e-85 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029906 [exp] 1944 / 0 AT1G09040 385 / 6e-117 unknown protein Lus10037506 [exp] 336 / 1e-99 AT1G09050 359 / 7e-112 unknown protein Lus10006519 [exp] 329 / 2e-97 AT1G09040 350 / 1e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019300 [exp] 526 / 7e-170 AT1G09040 384 / 1e-118 unknown protein Potri.005G027300 [exp] 508 / 5e-163 AT1G09040 386 / 1e-119 unknown protein Potri.008G210200 [exp] 367 / 2e-110 AT2G47820 375 / 4e-117 unknown protein Potri.010G023900 [exp] 363 / 3e-109 AT2G47820 381 / 2e-119 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004495 pacid=23169697 polypeptide=Lus10004495 locus=Lus10004495.g ID=Lus10004495.BGIv1.0 annot-version=v1.0 ATGGTGTCTATTCAGCAGGATCATGACGACGAGGATCTAGTGAAGGAATTAGATGTGGAGCGAGTAGTTTCTGCAAGTTCACTGAATATATGTGGCATCT CCGGATCTCCAAGCCTGAATCCTAGAATCGGAGACGACTATCAAGTCAAAATCCCTGGATTGATGTCAGAATCAGAATATCTTCAGCTTTTGAACTTCCC TTTGGATTCAGAAGGAAAACCGGACTCTTCCATTCGCTTCCTCAAAGGCCTCCCCATCTCGATCATGCTCATTCACAATAAAGTTGACCCCGAGGGCGAG AAAGAGCTCAAATTGCTAAGCCACTCTGGCAATGCAGTTGGAACAAAGAAGTCCATCAAGTCTGGCAAGAACAAGAAAGCCAATGCGGTGGAGAAATCCA TTTCAGAGCCGGATGAAGAACCACTTGATGACATATATGAGAAAACTAAACTAGAGAAAGTGAAATCGAAATGCAGAAGGACGAAAATGAGTTCTTGCTT AGTTCCTGGGATGTTAGGGAGCAGTTTGGATGAAGATCAAGTGGAGAGCTTTATCCTTGGGCTATACATTTTCGGTAAGAGCTTCGTCCTGGTGAATAAA TTCGTCGACAACAAAGGAATGGGCGACATATTGTCATTCTACTACGGGAGGTTCTACGGAACTGATAGATACAACAGATGGTCGGATAGTCGTAAGGTGA AGAGGAAGAAGTTCATCTCCGGTGAAAAGCTTTTCACCGGATGGCGCCAGCAGGAACTCATTTCGCGCTTGCAACCTCACATCCCGGAGAGTTACCAGAA GACTTTCCAAGAGATCTCCGAGGCGATCGCTGAGGGGAAGATCCCGTTAGAAGACTATGTATCCAACTTAAAAGCTGCGGTTGGGATTCAAGTTTTGGTG GAAGCTATTGGCATTGGTAAAGGGAAAGAAGATCTGACAAACCCTGCAATGGAATCATCTATGATGCTTCCTGCTACTAGCAAGGCTTGTTCATCTCTCA CAACGAGCGAGATCGTGAATCTCTTGACCGGTGGGTTCCGATTGAGCAAAGCTCGCTGCAACGATATCTTCTGGGAAGCTGTTTGGCCGCGGTTGCTGGC ACGAGGGTGGCACTCTGAGCAGCCAAACAACCTGACTTACCTCGATGGGAAAACATATCTCGTTTTCCTTGTCCCCGGTGTCAAGAAGTACTCGAGACGG GATCTCGTGAAAGGGATCCAGTATTTCGATTCCGTTAATGATGTCCTGAGCAGAGTTGCGTCCGAACCAAAGCTGATGGAGCTTGAAGAAGCTGGCTGCA ATACAAACGAGTCGCAACAATCGTTCGATTCTCGACAACATTACCTCAAGCCTCGAGTTTCTAACGGCGGTACACGGTCTGTGAAGTTCACTGTCGTGGA TTCGAGCTCATCTTTGCACGGGGTGAAATTAGTTCGAGCGAAGAGGATGAGATATTCGTCGCGTGATCTGATGGTTACGTCTATGGTTACGAAGATCGCA GGTGTAGCAGGAACTTTGTCAATCGAGGATACGAAGGAGGAAGATGAAGAAGAGGACGACATTAAGGATGTGAAAACGGTCAACGAAGTCAAAGCAAAAT ATGTCAAGATCGATAAGGTTGTTCCGTCGAATAATGATAAATCAGCAAAGTTCACCATTGTCGATACTAGCGTGGCTTGTAGAGATAAATCGTGGAAGGT CTTTGAACTCAGGCATTTACCGACTATTGATGATAAAGTTACTCGTCGGTGGATCAATCTGTCGAAAGAAGATCGGAAAACTGATAAGGATCTCAAAGTG GATGATGCTGCAGATTCAGCTGGTAAAGAGTCACATAGCAAAAGTAATGTGCAAGGATCTGATAAGCTTACTCAAGGTAGTTCAGAGCCAGGGAAACCGA GTTCAGACACTCTGGATCAGGGCATTGAATCAAATGGAACTCAATGGCGCGGTAAGGCAGCAATGCAACAATTCAGCAGAAGGCCGAAATCTGGACATTC AAACAACTTGGTTCCTCTTGTGAAACGGCGTAGGTTAACTGCTTGCATCAGTACAGAGATAAACCAAGTCATGGTGAACTTTCCTGATAAACTTGGGTCG CAAGAAAAGAAGATTCGATCTAGTTTAGACTTGTCGTCAAAGAAGGCAGTCAGGAAAACCATCCCTGATGAGTGTGCTGATCACGGGGGAAGCGGTATAG CCATATCGAAAGTCAGTGCTTCTGACCGTGAACCGTTGCTAGTAAAGCTTCCTGGTATACTTGGGTCGAAAGGGAAGAAGGTTCGCTATGATTTGGACAA CAGCCTTGAAGCCGGTCCTCTACCAGCACCAAGTGAGCCTGGATCGTTGCTGCTTAGGTTTCCGTGTAAACTTGAATCGAAAAGGAAGAAGGTTCACTAC GATGTAGACACACCAAAGACAGTCCGGAGGGACGACAGTCTAGTGGTCGGTCTTCAAGCAAAGCCCTCAAATGAACGGCGTTCGGTTGGATCGAAACGGA AGAAGGTTCGCTACGATTTGGACTCGTCATTGAATGCTATCAGGAAGAACAATGGTCTTGAATTCGGTCCTGGTCATGCAAAGCCATCATCTGCCGAAGG GTGTTCCAATGAACCTGGATCGTTGCTGCTAAAATTTCCCCGCAAACTTGGTTCTACAGTCGAAATTGCCCCTCAAGCAAAGCCGTCAACAGCTGAAGTC TGTTCTGTTACAGCCATTTCGAAGAAATCCGATGCTGCTGCTCATGTACCTGACACAAAGCAGCAAGAACAGGAATCTTTGCCCGGCTTGATCCTCCCAA AATCGCGGAAGGAATCCGAAACTCGTCAACCAGAGATTAAAGAGATTAAAGAGATGGAAACGAGTGAATGTGTTACTTCCGAGCCAAGAAATTTCAGTCC TGGAGTGGAACCACAAGAGACTGAAATGGGATGTAGGAGGCAAAGCAGAAGAAACCGGCCATTGACAACAAGAGCATTGGAAGCTCTCGAATACGAGTTT CTGAACGTGAAGAAGCGGCCTAGGACACAGGAAAGTTCGTCTTCTCATAGGGCTCGGGCTCGTAGCAAGAAGAGCAAAGTGATGTCATCATCAGCAGCAA CGCATTCTGCTGATGCTAGTACCATCAAGCTTGAGGATGTCGTTGCTAATGAACAAAAGATCGAAAAGGAAGGAACTACTTCGAGCATCAATGAACATTT TGAGGATAAACCAGCGCCCAAGATAAAAAATGGAGGGACGTCTGCAAGGGTCGTTGAACGTTCTGATGGTAAACCTGCAGCGGAGACGAACGAGATCGAA AACGGAGTTAAACCTTCGAGCATCGATGAACATTCTGAGGGTAAACCAGCAACGACCATGGATACACATAAGATCGAGAATGGAGTGACTACTCCGATCA TCGATGAACATTCTGAGGATAAACCAGCATCGAAAACAGATACACGCAAGATCGAGAATGGAGTAACTACTTCAATCGTCGATGAACAACATTCTGAGGG TAAGCCAGCATCCACCACTGATCCTCAGACCTGCTGCTGTCCTTCAAGCTGA
AA sequence Show only first row Show all	>Lus10004495 pacid=23169697 polypeptide=Lus10004495 locus=Lus10004495.g ID=Lus10004495.BGIv1.0 annot-version=v1.0 MVSIQQDHDDEDLVKELDVERVVSASSLNICGISGSPSLNPRIGDDYQVKIPGLMSESEYLQLLNFPLDSEGKPDSSIRFLKGLPISIMLIHNKVDPEGE KELKLLSHSGNAVGTKKSIKSGKNKKANAVEKSISEPDEEPLDDIYEKTKLEKVKSKCRRTKMSSCLVPGMLGSSLDEDQVESFILGLYIFGKSFVLVNK FVDNKGMGDILSFYYGRFYGTDRYNRWSDSRKVKRKKFISGEKLFTGWRQQELISRLQPHIPESYQKTFQEISEAIAEGKIPLEDYVSNLKAAVGIQVLV EAIGIGKGKEDLTNPAMESSMMLPATSKACSSLTTSEIVNLLTGGFRLSKARCNDIFWEAVWPRLLARGWHSEQPNNLTYLDGKTYLVFLVPGVKKYSRR DLVKGIQYFDSVNDVLSRVASEPKLMELEEAGCNTNESQQSFDSRQHYLKPRVSNGGTRSVKFTVVDSSSSLHGVKLVRAKRMRYSSRDLMVTSMVTKIA GVAGTLSIEDTKEEDEEEDDIKDVKTVNEVKAKYVKIDKVVPSNNDKSAKFTIVDTSVACRDKSWKVFELRHLPTIDDKVTRRWINLSKEDRKTDKDLKV DDAADSAGKESHSKSNVQGSDKLTQGSSEPGKPSSDTLDQGIESNGTQWRGKAAMQQFSRRPKSGHSNNLVPLVKRRRLTACISTEINQVMVNFPDKLGS QEKKIRSSLDLSSKKAVRKTIPDECADHGGSGIAISKVSASDREPLLVKLPGILGSKGKKVRYDLDNSLEAGPLPAPSEPGSLLLRFPCKLESKRKKVHY DVDTPKTVRRDDSLVVGLQAKPSNERRSVGSKRKKVRYDLDSSLNAIRKNNGLEFGPGHAKPSSAEGCSNEPGSLLLKFPRKLGSTVEIAPQAKPSTAEV CSVTAISKKSDAAAHVPDTKQQEQESLPGLILPKSRKESETRQPEIKEIKEMETSECVTSEPRNFSPGVEPQETEMGCRRQSRRNRPLTTRALEALEYEF LNVKKRPRTQESSSSHRARARSKKSKVMSSSAATHSADASTIKLEDVVANEQKIEKEGTTSSINEHFEDKPAPKIKNGGTSARVVERSDGKPAAETNEIE NGVKPSSIDEHSEGKPATTMDTHKIENGVTTPIIDEHSEDKPASKTDTRKIENGVTTSIVDEQHSEGKPASTTDPQTCCCPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09050			unknown protein		Lus10004495 [exp]	0	1
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	1.0	0.8546
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	2.4	0.8487
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10005584 [exp]	2.6	0.8154
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	4.0	0.8383
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	6.0	0.8092
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	6.2	0.7934
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	8.8	0.8464
AT1G26580			unknown protein		Lus10037097 [exp]	10.2	0.7448
AT1G26580			unknown protein		Lus10036888 [exp]	16.4	0.7738
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	16.6	0.8279

Compare expression of checked genes

Lus10004495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.