Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13610 683 / 0 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 452 / 4e-152 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT4G25750 444 / 5e-149 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G52860 442 / 5e-148 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT5G19410 436 / 4e-145 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT3G55110 345 / 4e-109 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 341 / 6e-108 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55130 334 / 8e-105 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55090 333 / 2e-104 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 328 / 2e-102 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029905 [exp] 1156 / 0 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 450 / 1e-150 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 449 / 5e-149 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 439 / 5e-146 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 421 / 3e-139 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 420 / 9e-139 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 334 / 4e-104 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 323 / 5e-100 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 301 / 7e-93 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064300 [exp] 730 / 0 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 729 / 0 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 499 / 6e-170 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 492 / 3e-167 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 489 / 5e-166 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 431 / 7e-143 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 411 / 7e-136 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 342 / 9e-108 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 341 / 5e-107 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 338 / 5e-106 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10004496 pacid=23169713 polypeptide=Lus10004496 locus=Lus10004496.g ID=Lus10004496.BGIv1.0 annot-version=v1.0 ATGAAGAAACAAGGATTCGAAATCCAAGCATCGGGGATCACCTACACAATCCCGGCGGAGCCTCCGCCGCCGGGAAAACATTCACCCTTCTTCGCCGACG TGTTTCCCGGCGCCGGAGACGAGGAGAAACTACCGCCACTGCCGACGACGAAGACAAGGCACGTCCTTAACGACGTCAACCTGACGGCGAAGCCGTGGCA GATTCTGGCTATCGTGGGGCCCAGCGGCGCCGGGAAATCCACTCTGCTGTCGATCCTCGCCGGGAAAATCACCCCGAGCTCCGGCTCCGTCCTGGTCAAC GGCGGCCACGTCGACGACTATGACCGCCGAAAATTCCTCAACAAGATCTCCGGCTACGTCACCCAGCGGGACACATTATTCCCTCTCCTCACCGTCGAGG AAACGCTAACTTTCATCGCCAAGCTAAGAATCCCCAATGCCGATATCGGATCGGGGGTCGGATCCTTGATCCAGGAGCTCGGGTTGAGCCAGGTGGCACA CACGAGGGTCGGTGACGAGTCGTGCCGGGTCAGGGGAATATCCGGCGGGGAAAGGAGGCGGGTTTCTATCGGGGTCGGAGTGATCCACGACCCGAAGGTT CTGATCCTCGACGAACCGACTTCGGGACTGGACAGCTCATCGGCGCTGCAGGTCGTCGGAATGCTGAAGGCGATGGCAGAGACTAGAGGGAGGACGATCG TGGTCAGCATTCACCAACCCGGGTTTCGAATCGTAAAGCTTTTCGGTTCGATTTTTTTCTTGGCTGGTGGGTCCGGTTTGTACCAGGGATCAGTCGATCA GCTCGGGTTGAGGTTGCGGTCGATCGGGCTGGAGGTTCCCAGTCATGTCAATGTGGTCGAGTTCGCTATGGAATCAATCGATTCGTTTCGAGAAGCCATT CATAGCAACGACTACGAGATTCGAAATTTGAGACAGAGGAAAACTGAGAACTGCACTCTTCAACAACTTTTCGACGGGAATGGAATCGCAGACGAGGAAA ATGCAATCATCAATGTCGGATTCGACGATCTCAATTTCCGAGTTCGGGATCGGTACCCAAATTCTTGGTTTCGCGAAACTGCGATTCTTACTCACAGATT CTCAAAGAACATATACAGAACAAAGGAGCTATTGGCCGGCCGATCAATCCAGATGCTAATCTCCGGCCTAGTCCTGGGCTCAGTCTTCTCCAACGTGAAA CCAGATCTCGTCGGAGCTCGAGAACAAGTCGGCCTATTCGCATTCATCCTCACATTCCTCCTATCCTGCACAACAGAAGCCCTCCCAGTTTTCCTCCAAG AGCTCGAGATCTTCAAGAACGAAACCTCCTCCAAAAGCTACAGAGTCTCATCCTACGCCATCGCCAATTCCTTAGTCTACCTCCCGTTCCTCCTAATTCA ATCAATCCTCTTCTCAATTCCGGTCTACTTCCTCTCCAATCTAAACCCTAATTTCAAACACTTCTCCTTCTTCCTCCTCCTAATCTGGCTAATCCTCTAC ACAGCCAATTCAGTCGTCACCTGCTTCAGCACTCTGGTCCCGAATTTCATCGTCGGGAACTCTGTGATCCAGGGGGTGATGGGCTCCTTCTTCCTCTTCT CCGGCTACTTCGTCTCCAGACAAGGAATCCCTGACTACTGGATATTCATGCACTATGTCTCCTTGTTTAAGTATCCGTTTGAAGGTTTCCTGATCAACGA GTTTGCCGACCCGGAGAAGTGTATTGAGACGGTGCTCGGAGCTTGCTCCGTCACCGGAGAGGCGGTGCTGAAGGAGGAAGGGTACGGCGGGGAGGAAGGG CGGTGGAGGAACGTTGCGATTATGGTTGGGTTTATTGTGTTCTATAGGTTTATCGGGTATTTGATTCTTAGGGTTAGGTGTTCTTCTTCTTCTTCTGCCG GCGGTGGTTCGAGGCGGCGGCGGAGGGGGATCGGGTCGGGTAAGAATAAGATATGTGCCCGGAAACCGTGCCCGGTTGGGGAGGTGGAATTGTGA
AA sequence Show only first row Show all	>Lus10004496 pacid=23169713 polypeptide=Lus10004496 locus=Lus10004496.g ID=Lus10004496.BGIv1.0 annot-version=v1.0 MKKQGFEIQASGITYTIPAEPPPPGKHSPFFADVFPGAGDEEKLPPLPTTKTRHVLNDVNLTAKPWQILAIVGPSGAGKSTLLSILAGKITPSSGSVLVN GGHVDDYDRRKFLNKISGYVTQRDTLFPLLTVEETLTFIAKLRIPNADIGSGVGSLIQELGLSQVAHTRVGDESCRVRGISGGERRRVSIGVGVIHDPKV LILDEPTSGLDSSSALQVVGMLKAMAETRGRTIVVSIHQPGFRIVKLFGSIFFLAGGSGLYQGSVDQLGLRLRSIGLEVPSHVNVVEFAMESIDSFREAI HSNDYEIRNLRQRKTENCTLQQLFDGNGIADEENAIINVGFDDLNFRVRDRYPNSWFRETAILTHRFSKNIYRTKELLAGRSIQMLISGLVLGSVFSNVK PDLVGAREQVGLFAFILTFLLSCTTEALPVFLQELEIFKNETSSKSYRVSSYAIANSLVYLPFLLIQSILFSIPVYFLSNLNPNFKHFSFFLLLIWLILY TANSVVTCFSTLVPNFIVGNSVIQGVMGSFFLFSGYFVSRQGIPDYWIFMHYVSLFKYPFEGFLINEFADPEKCIETVLGACSVTGEAVLKEEGYGGEEG RWRNVAIMVGFIVFYRFIGYLILRVRCSSSSSAGGGSRRRRRGIGSGKNKICARKPCPVGEVEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10004496 [exp]	0	1
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	1.0	0.9278
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	5.5	0.8805
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10029905 [exp]	6.9	0.8635
AT4G39520			GTP-binding protein-related (....		Lus10005800 [exp]	18.3	0.8985
AT1G22490	bHLH	bHLH094	basic helix-loop-helix (bHLH) ...		Lus10000332 [exp]	22.8	0.8599
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005441 [exp]	25.3	0.8955
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	32.7	0.8929
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	33.9	0.8930
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	44.0	0.8855
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	45.3	0.8850

Compare expression of checked genes

Lus10004496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.