Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55110 319 / 1e-104 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G03840 318 / 2e-103 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G66730 315 / 2e-102 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G13810 314 / 5e-102 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT3G50700 310 / 3e-101 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G44160 308 / 2e-100 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G45260 305 / 2e-99 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03150 307 / 3e-99 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT4G02670 303 / 4e-99 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT1G14580 301 / 2e-97 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029904 [exp] 561 / 0 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 322 / 3e-104 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10010820 [exp] 312 / 3e-104 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 317 / 9e-103 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 317 / 2e-102 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041723 [exp] 313 / 3e-101 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 311 / 7e-101 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 310 / 7e-101 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041356 [exp] 314 / 2e-97 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019200 [exp] 326 / 9e-107 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 325 / 4e-106 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G208444 [exp] 322 / 3e-104 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.007G135000 [exp] 315 / 8e-103 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.017G017100 [exp] 314 / 3e-102 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 313 / 2e-101 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.002G048000 [exp] 311 / 2e-101 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.016G088500 [exp] 310 / 2e-100 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 311 / 3e-100 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 310 / 6e-100 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004497 pacid=23169688 polypeptide=Lus10004497 locus=Lus10004497.g ID=Lus10004497.BGIv1.0 annot-version=v1.0 ATGTCAAATATCATCAAAGGTGGGATCTTTGGTGGAGATGAAGACGGCCAACAACAACTAATATTGGCTTCACAACAAGAAGAAGTAGCTACCCATCATC ATCACCACCACTTGATAAGCTCCATAGCTAATTATTCAACCACAACAACCAGCAACTCCAACGGATCCATTACTACTATTACTACTACTCAACCAGCTCC TCATCTCACCAAGAAGAAGAGAAACCTCCCCGGGAATCCAGATCCGAAAGCCGAAGTAATTGCTCTATCGCCAAAGACGCTCATGGCTAAGAATCGGTTT GTGTGCGAGATATGCAGCAAAGGGTTCCAAAGAGACCAAAACCTCCAACTACACAGGAGAGGGCACAACCTACCGTGGAAATTAAAACAAAGGAATAAAG ACGAGGTGATAAGGAAAAAAGTCTACGTCTGCCCTGAACCGGGGTGTGTCCACAACAACCCGGCCCGGGCACTGGGCGACCTGACCGGGATCAAGAAGCA CTTTAGTAGGAAACATGGAGAGAAGAGGTGGAAGTGCGAAAAGTGTTCGAAGAAGTATGCCGTTCAGTCTGATTGGAAGGCCCATTCCAAGTCATGTGGG ACTAAGGAGTACAAATGCGATTGTGGCACCGTATTTTCCAGGAGGGACAGCTTCATAACTCACAGAGCATTCTGCGATGCCCTAGCTGAGGAAACCAAAG CCTCAGCTGGAATCATAGTGAATCATTCTACTCGACAATCAGTAGCTAATTACCAAATTACCCTCAACACCACCACCACCAACAAGCCAACAATCCCAGA TCATCAGTTATTCAGCCCTACTCCTCCAGAAACGACGACGTCGTCCAAACTCAACCATTTCATCTCTCTACCACTACCACCCCCGCCGACGACCACTTCC ACCACCTTGTCATCCTCCCTCCACCTCAGCACCACCCCGTTTTTTGCCAGCTCATCAGCGTCCATGTCAGCCACCGCGCTGCTCCAGAAGGCCGCCCAGA TGGGGTCCACCCTCAGCAGCTGCCATCCCACCACTCCATTTCCCTCCACCACCACCTCGTCATCGCCGACAGCCAACAGCATGCAGCTGTTCATGCGGGG TGGCGATCCGTACAGCAACGACAGTAGTCAACTACTTTTCTCCAACCAGTTGTTCCACGAAGGGTTTATGAACGGTAACTTTCCAGGCTCGCCGAGCTTC GTCAACGGCAGCGTTAATAATAGTAATAAAAATAATAGTAATAATGCCAACGCTTCTGCCGCCGCGTTGTGGAAGAGCTTTGGCGGTGTGGATAACGGCG GAATGACCACGACGGTTGACTTCTTGGGGGTTAATAATGGCGAGACGACGTCGTCTACTTCGAGGGTTACGAGGAATATGGACATGGTTCTAACTAGGTT TGATGATGAGCCACTTAATTAA
AA sequence Show only first row Show all	>Lus10004497 pacid=23169688 polypeptide=Lus10004497 locus=Lus10004497.g ID=Lus10004497.BGIv1.0 annot-version=v1.0 MSNIIKGGIFGGDEDGQQQLILASQQEEVATHHHHHHLISSIANYSTTTTSNSNGSITTITTTQPAPHLTKKKRNLPGNPDPKAEVIALSPKTLMAKNRF VCEICSKGFQRDQNLQLHRRGHNLPWKLKQRNKDEVIRKKVYVCPEPGCVHNNPARALGDLTGIKKHFSRKHGEKRWKCEKCSKKYAVQSDWKAHSKSCG TKEYKCDCGTVFSRRDSFITHRAFCDALAEETKASAGIIVNHSTRQSVANYQITLNTTTTNKPTIPDHQLFSPTPPETTTSSKLNHFISLPLPPPPTTTS TTLSSSLHLSTTPFFASSSASMSATALLQKAAQMGSTLSSCHPTTPFPSTTTSSSPTANSMQLFMRGGDPYSNDSSQLLFSNQLFHEGFMNGNFPGSPSF VNGSVNNSNKNNSNNANASAAALWKSFGGVDNGGMTTTVDFLGVNNGETTSSTSRVTRNMDMVLTRFDDEPLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10004497 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	3.7	0.6855
AT2G33490			hydroxyproline-rich glycoprote...		Lus10002580 [exp]	13.0	0.6329
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	23.7	0.6545
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	24.1	0.6604
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	30.8	0.6416
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	32.7	0.6380
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	34.1	0.6620
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	37.8	0.6353
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	42.7	0.6312
					Lus10001731 [exp]	43.1	0.6523

Compare expression of checked genes

Lus10004497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.