Plant FIBer expression Database

Lus10004498 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05410 208 / 7e-68 Photosystem II reaction center PsbP family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029903
[exp]
216 / 2e-71 AT3G05410 286 / 2e-97 Photosystem II reaction center PsbP family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G027100
[exp]
242 / 5e-82 AT3G05410 246 / 6e-82 Photosystem II reaction center PsbP family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10004498 pacid=23169696 polypeptide=Lus10004498 locus=Lus10004498.g ID=Lus10004498.BGIv1.0 annot-version=v1.0
ATGACCCAATCGTCCGGAGATCGGAAAGAAGGGCTGAACAGACCACCAGCCGAGCAATTCTTCCCACTAGCATCAAAATTCGGCCGGCGGTTGCTCCTCG
GGACAGGCTCAGCTTCAGTAGTCGCCGTCGGAGCTAACTTCATCGGACTCACCAGCTTCCTTCTCGGCTTGTCACCGGTTACCGGTCGAAATCTCAAGCT
CGACTTTATATATCCGGCGAATTGGGTCGGCGACCAGACGCTGCTGTACCGCGCCGCGGCGAGAACAGAGCTACAGCGGTCGCTCGACCCTCCTCCTCTA
AGCAACTCGATCTCCGCCGACCGGGGGAGGAGGAGATCCAACATTGACGAGCCGGCGGTGGCGTTTGGTCCGCCGGGATCATCCGGAGAGCTCAACGTCA
GCGTCATTGTCTCCCCAGTCTTTCCAGACTTCTCAATTGAAGCGTTCGGAGGAGCAGAGGAGGTGGGGCACGCAATCGTTATGACGATCGCCGGACGGCG
GCCTAATGTGAAGGGAACTCTGATGAAATCGATTTAA
AA sequence
>Lus10004498 pacid=23169696 polypeptide=Lus10004498 locus=Lus10004498.g ID=Lus10004498.BGIv1.0 annot-version=v1.0
MTQSSGDRKEGLNRPPAEQFFPLASKFGRRLLLGTGSASVVAVGANFIGLTSFLLGLSPVTGRNLKLDFIYPANWVGDQTLLYRAAARTELQRSLDPPPL
SNSISADRGRRRSNIDEPAVAFGPPGSSGELNVSVIVSPVFPDFSIEAFGGAEEVGHAIVMTIAGRRPNVKGTLMKSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G05410 Photosystem II reaction center... Lus10004498
[exp]
0 1
AT1G19150 LHCA2*1, LHCA2*... photosystem I light harvesting... Lus10039912
[exp]
2.2 0.9569
AT1G78995 unknown protein Lus10033323
[exp]
4.5 0.9503
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Lus10029979
[exp]
6.0 0.9412
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Lus10039629
[exp]
7.5 0.9466
AT2G01870 unknown protein Lus10030135
[exp]
8.2 0.9320
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Lus10039739
[exp]
8.9 0.9462
AT3G63140 CSP41A chloroplast stem-loop binding ... Lus10006931
[exp]
8.9 0.9460
AT3G25690 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLA... Lus10034382
[exp]
9.5 0.9339
AT4G24700 unknown protein Lus10041942
[exp]
9.8 0.9336
AT3G14470 NB-ARC domain-containing disea... Lus10004127
[exp]
10.4 0.9227

Lus10004498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.