Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05420 986 / 0 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 901 / 0 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 417 / 9e-139 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G18590 203 / 5e-56 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G18610 110 / 3e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 102 / 1e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 79 / 5e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT4G04670 77 / 2e-14 Met-10+ like family protein / kelch repeat-containing protein (.1) AT4G27780 68 / 7e-12 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 67 / 1e-11 ACBP1 acyl-CoA binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029902 [exp] 1294 / 0 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 1073 / 0 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 1061 / 0 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 426 / 2e-141 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 424 / 2e-141 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 404 / 7e-134 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 398 / 2e-131 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10034163 [exp] 196 / 2e-53 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 174 / 1e-45 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026900 [exp] 1037 / 0 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 1009 / 0 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 430 / 5e-144 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 424 / 2e-141 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G214900 [exp] 225 / 9e-64 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 220 / 5e-62 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 125 / 7e-30 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 118 / 1e-27 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 106 / 7e-24 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 99 / 3e-21 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [flax] [poplar] FERM_M PF00887 [flax] [poplar] ACBP Acyl CoA binding protein CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10004499 pacid=23169708 polypeptide=Lus10004499 locus=Lus10004499.g ID=Lus10004499.BGIv1.0 annot-version=v1.0 ATGTCGATGGCGAGGGCAAGCTCTGGCCTCGCGTATCCGGATCGATTCTTTGCAGCCGCGTCGTACGTTGGATTCGATGGATCTCCCAATTCCACCTCCG CCGTCACCTCCAAGTTCCAGACTGACACCGCCTTGCTCCTCTATGGCTTGTATCAGCAGGCGACTGTTGGACCATGCAACATACCCAAACCCAGTGCGTG GAATGCTGTGGAGCTAAGCAAGTGGAAAAGCTGGCAGGGCCTTGGGAGCATGGCCACCACTGAAGCGATGCGCCTCTTTGTGAAGATATTGGAGGAAGAA GACCCGGGTTGGTATTCTAGAGCATCTAACTTAGTCTCTGAACCTGTTGTAGATATGGCAGTGAATCACAACTCTGAAGCCAATCATGCTGTTGAGAATG GCAATGTTTTGCCTGAGACAAAGACTATAGCTAGTGAAAATGGGACTCACATGGAAACTCAAGACAAAGATGTTGTCTCCGAAGGCTTTGGTTCAGTAGT TGTATATGACCAATGGACCTCACCCCCAGTATCTGGTCAACGTCCTAAATCCCGTTACGAGCATGGGGCAGCAGTTATCGAAGATATGATGTATATATAT GGTGGAAACCATAACGGGCGTTACCTAAACGATCTTCATGTTTTGGATCTGAGAAGCTGGACTTGGTCAAAGGTTGAAGGAAAAGTTGGAGCTGGGGAGT CTGATTCTGCATCTACATTAGCTCCTTGTGCTGGTCATACTTTGATACCTTGGGAGAATAAGCTTATATCGATTGCTGGACACACAAAGGATCCTTCTGA GACCATTCAAGTGAAGGGATTCGATTTAAAAACCGGCACATGGTCAATGTTAAAGACTTACGGGAAACCACCAGTAAGTTCATTTACTGAAGCGATTTTT GAATCTCTTTCTCCATCTGCTATCTGGAAAGCCTCAGAATTGATTGGTCCCTGGATATGGGTCTCCCGTGGAGGACAATCTGTCACCCTATTTGGAACAA GCTTAGTGATATTTGGCGGAGAAGATGCAAAAAGATCTTTGTTGAATGATCTTCATATCCTTGACCTTGAAACCATGACCTGGGATGATATCGATGCCAT TGGGGGGCCTCCTTCTCCAAGGTCTGATCATGCTGCTGCAGTACACGCGGAGCGTTATCTTCTCATCTTTGGTGGAGGCTCGCATGCAACTTGTTTTAAC GATCTCCACGTGCTTGACCTGCAAACAATGGAGTGGACTCGACCAGCACAACAGGGCGACATCCCAACTCCACGGGCTGGACATGCAAGTGTGACAGTTG GAGAGAATTGGTTTATTGTTGGTGGGGGTGACAACAAAAGTGGGGCATCTGAAACTGTTGTTCTAAACATGTCCACTCTTGTATGGTCTGTTGTTACATC CGTTCAAGGCCGTGTTCCTGTAGCCAGCGAGGGTCTGAGTTTGGTTGTGAGGTCGTACAATGGTGAAGATGTTCTTGTAGCGTTTGGAGGATATAATGGT CGCTACAACAGTGAGGTTAATGTCCTTAAACCGAGTCACAAATCGACACTGCAATCGAAGATTATGGAGAGTCCTGTCCCTGACAGCGTGTCGGCTGTCC ACAACGTAACAAATCCGACAAGGGATCTGGATGCGGAGCTCGAGCTGAGCCAAGAGAGAAAAATTAGGGAAGTCGATAATGGCGAACCAGAACCCACAAA ATCCAGAGTCGAAGGAAACAATGAACATCTCGTTGCCACCCTAAAGGCAGAGAAAGAAGAAATGGAATCCTTTCTCACCAATGAGAAGGTGCAGAATGGC CAACTTAAACAAGAACTATCCGAAGCCGAAGATCGCAACGCTGAGCTTCACAAGGAGCTTCAATCCGTTCGCAGCCAGCTTGCTTCCGAGCAATCAAGGT GTTTCAAGTTAGAGGTTGATGTTGCCGAGTTGCGACAAAAGCTGCAAACGATGGAGGCGCTGCAGAAGGAGCTCGAGCTCCTGCAGCGTCAAAAGGCTGC ATCCGAACAAGCAGCTGCACTAAGCTCGAAGCAGCGGCAGGGATCCGGTGGCGTATGGGGTTGGCTTGCAGGGTCCCCTGGCCACCGTGATGAAGAAGAA GACTGA
AA sequence Show only first row Show all	>Lus10004499 pacid=23169708 polypeptide=Lus10004499 locus=Lus10004499.g ID=Lus10004499.BGIv1.0 annot-version=v1.0 MSMARASSGLAYPDRFFAAASYVGFDGSPNSTSAVTSKFQTDTALLLYGLYQQATVGPCNIPKPSAWNAVELSKWKSWQGLGSMATTEAMRLFVKILEEE DPGWYSRASNLVSEPVVDMAVNHNSEANHAVENGNVLPETKTIASENGTHMETQDKDVVSEGFGSVVVYDQWTSPPVSGQRPKSRYEHGAAVIEDMMYIY GGNHNGRYLNDLHVLDLRSWTWSKVEGKVGAGESDSASTLAPCAGHTLIPWENKLISIAGHTKDPSETIQVKGFDLKTGTWSMLKTYGKPPVSSFTEAIF ESLSPSAIWKASELIGPWIWVSRGGQSVTLFGTSLVIFGGEDAKRSLLNDLHILDLETMTWDDIDAIGGPPSPRSDHAAAVHAERYLLIFGGGSHATCFN DLHVLDLQTMEWTRPAQQGDIPTPRAGHASVTVGENWFIVGGGDNKSGASETVVLNMSTLVWSVVTSVQGRVPVASEGLSLVVRSYNGEDVLVAFGGYNG RYNSEVNVLKPSHKSTLQSKIMESPVPDSVSAVHNVTNPTRDLDAELELSQERKIREVDNGEPEPTKSRVEGNNEHLVATLKAEKEEMESFLTNEKVQNG QLKQELSEAEDRNAELHKELQSVRSQLASEQSRCFKLEVDVAELRQKLQTMEALQKELELLQRQKAASEQAAALSSKQRQGSGGVWGWLAGSPGHRDEEE D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	0	1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	1.0	0.9381
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10038366 [exp]	2.8	0.9178
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	3.0	0.9077
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	3.0	0.9226
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	3.6	0.8979
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	3.7	0.9360
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	4.8	0.8676
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	5.3	0.9128
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	5.9	0.9143
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	6.6	0.8378

Compare expression of checked genes

Lus10004499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.