Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09070 161 / 3e-48 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT3G16510 133 / 4e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 123 / 4e-34 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15740 99 / 4e-24 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G62780 83 / 1e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G63220 50 / 1e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G55470 49 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G11100 49 / 1e-06 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 40 / 0.0004 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 40 / 0.0006 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029901 [exp] 315 / 4e-109 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10006523 [exp] 127 / 2e-35 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10029565 [exp] 58 / 1e-10 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 58 / 1e-10 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10003570 [exp] 60 / 3e-10 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 58 / 9e-10 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 46 / 1e-05 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 45 / 2e-05 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 44 / 5e-05 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018600 [exp] 179 / 1e-55 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1) Potri.005G026700 [exp] 166 / 2e-50 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1) Potri.010G024200 [exp] 152 / 5e-45 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 129 / 3e-36 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G070400 [exp] 82 / 4e-18 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 76 / 4e-16 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G107175 [exp] 74 / 2e-15 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G155300 [exp] 56 / 2e-09 AT2G45760 120 / 4e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.013G048400 [exp] 55 / 7e-09 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 55 / 8e-09 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10004500 pacid=23169724 polypeptide=Lus10004500 locus=Lus10004500.g ID=Lus10004500.BGIv1.0 annot-version=v1.0 ATGGAGTGCAGGTCAATAGAGATCACGATCCAATCCGCCAAGGACCTGAAGAACGTCAACCTCATCTCGAAGATGGACGTCTACGCCGTCGCTTCTATCA ATGGCGATCCCTACAATTCGAAGCAGAAGCACAAGACTCCCGTCGACAAGGACTCCGGACCTAACCCGAAGTGGAACCACCACGTCAGCTTCACCGTCGA CGAGCCTTCCCTCCAGCAGAACCGCCTCACCGTGAAGATCGAGCTCATCTCCGACCGCAGCCTCGGCGACCGCGAAATCGGCGAGGTCACCGTCCCGATC AAAGAGCTCTTCGACGAGAGCAGCAAAGGAGATTTCAAGGCCGAGAAGACAGTCAGCTACGCCGTCAGGACTTCCGGCGGGAAGAGCAAAGGGACGCTGA CGTTCTCGTACAAGTTCGGTGACAAATTCTCCGCTCCGGAGAAGGCGAAGAAATCGGATCATCAGGTGGCGGCTCCGCCGCCTATGATGGCTTATCCAGC TGGTGCAGCTGAGTCGAGCAGTGGATCGGGTTACCCGTACCAACCGCCTCCTCAGGGAGCTTATCCTGGTCCTCCACCGCAGGCCGGGTATCCTTACCAG TACCCGGCTCCGGGACAAGGTGGGTACCCGCCTCAACAGGCTTACGGAGGGGTACCGCCACAACAAGAGGGCTGA
AA sequence Show only first row Show all	>Lus10004500 pacid=23169724 polypeptide=Lus10004500 locus=Lus10004500.g ID=Lus10004500.BGIv1.0 annot-version=v1.0 MECRSIEITIQSAKDLKNVNLISKMDVYAVASINGDPYNSKQKHKTPVDKDSGPNPKWNHHVSFTVDEPSLQQNRLTVKIELISDRSLGDREIGEVTVPI KELFDESSKGDFKAEKTVSYAVRTSGGKSKGTLTFSYKFGDKFSAPEKAKKSDHQVAAPPPMMAYPAGAAESSSGSGYPYQPPPQGAYPGPPPQAGYPYQ YPAPGQGGYPPQQAYGGVPPQQEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	0	1
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	1.4	0.9347
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	1.4	0.9383
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10028275 [exp]	3.0	0.8969
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10040215 [exp]	5.0	0.8887
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10005966 [exp]	7.5	0.8842
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	8.4	0.8851
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	10.6	0.8655
AT4G29780			unknown protein		Lus10027622 [exp]	13.6	0.8903
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10015415 [exp]	14.0	0.8726
					Lus10031606 [exp]	17.3	0.8512

Compare expression of checked genes

Lus10004500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.