Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 490 / 1e-172 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT3G56440 421 / 3e-146 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT2G40810 412 / 1e-142 ATATG18C homolog of yeast autophagy 18C (.1.2) AT5G05150 305 / 4e-101 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 101 / 2e-24 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT1G03380 43 / 0.0005 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029900 [exp] 702 / 0 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 575 / 0 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 565 / 0 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 493 / 1e-173 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 491 / 4e-173 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10003694 [exp] 387 / 9e-133 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 384 / 5e-131 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10023022 [exp] 54 / 5e-09 AT3G62770 46 / 7e-07 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036618 [exp] 53 / 5e-07 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018400 [exp] 525 / 0 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 517 / 0 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 491 / 3e-173 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 491 / 7e-173 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 414 / 5e-143 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.018G101200 [exp] 124 / 1e-31 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.011G132700 [exp] 56 / 3e-08 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 53 / 4e-07 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10004501 pacid=23169702 polypeptide=Lus10004501 locus=Lus10004501.g ID=Lus10004501.BGIv1.0 annot-version=v1.0 ATGTCCAGCCCTTACCCTCTCACCTACACATCCTCCTGCTCCTCTACTTCCTCCTCCACCACCTTCTACTCCATCCCACCCGACTCCGATTCCGTCTCCG ACGATTCCTCCTCAATCACCTCCTCCGCGGCAGCCGTCGAGGAGCCCGCTTCCTCCGGCCATAACCCTTCAGTCTTACACCTCTCCTTCAACCAGGACTA CAGCTGCTTCGTCGCGGGACTCGACAGCGGCTTCCGCATCTACAATACCGGGCCCTTCAAGCCCTTGTTCCGCCGCGAGACGATGGAATCTCCATCCCGC GGCGGCGGAATCGGAATTGTCGCGATGCTCTTCCGCTGCAATATACTCTGCTTCGTTGGCGGCGGCCCGGAGCCTATCTACCCGCCGAATAAAGTAATGC TATGGGACGACAACCTGTCCAGGTGCTTTGGAGAGCTCACGTTCCGATCGGATGTGAAGAACGTGAAAATCCGCCGCGACAGGATCGTCGTCGTTTTGCT CCAGGAGATCTTCGTTTACAATTTCGCCGACCTGAGGCTGGTGGATCAGATTGAGACGGCGATGAACAGTAAAGCACTATGTGAGGTTTCGCATACGTCT TCACCGATGGTGCTGGCGTGTCCTGGATTGCAGAAGGGGCAAATTCGGGTTGAGAATTACGGCTCGAAGCTGACAAAGTTCGTAATGGCGCATGATTCAA GGCTTGCTTGTATGTCCATGACCCAAGACGGGAGGTTGCTAGCTACTGCGAGCAGTAAAGGAACTCTGATTCGAGTTTTCAATACATTGGATGGTTCATT GCTTCGGGAGGTCAGGCGAGGAGCAGACAGAGCAGATATCTACAGCCTTGCATTCTCCTCGGATGCTTACTGGCTCGGTGTCTCGAGCGACAAGGGAACC ATTCATGTGTTCAGCCTCAAGGTCGATTCTGGGTCATTAGCAACACTGTCGAGTCAAAGATCACTCATTGCTCCTACTTCAAATTCCTCTGCCGGGTTGG GGGTTTCGTCTCTTTCTATCTTGAAAGGAGTGTTGCCAAAGTACTTCAGCTCGGAATGGTCGGTGGCTCAGTTCCGTTTGCCGGAAGGCTCTCATCAGTA CTTGGTTGGGTTCGGTCTGCAGAAGAACACTGTAGTCGTCATTGGACTGAATGGAAGCTTTTATAGGTGTGAGTTTGATCCTGTAACAGGAGGAGATATG AAGCAGCTTGAACACCATAATTTCCTTAGTGCAGATAATTTTCTTAGTGCAAACAATTTCCTGAAAGTAAAATAA
AA sequence Show only first row Show all	>Lus10004501 pacid=23169702 polypeptide=Lus10004501 locus=Lus10004501.g ID=Lus10004501.BGIv1.0 annot-version=v1.0 MSSPYPLTYTSSCSSTSSSTTFYSIPPDSDSVSDDSSSITSSAAAVEEPASSGHNPSVLHLSFNQDYSCFVAGLDSGFRIYNTGPFKPLFRRETMESPSR GGGIGIVAMLFRCNILCFVGGGPEPIYPPNKVMLWDDNLSRCFGELTFRSDVKNVKIRRDRIVVVLLQEIFVYNFADLRLVDQIETAMNSKALCEVSHTS SPMVLACPGLQKGQIRVENYGSKLTKFVMAHDSRLACMSMTQDGRLLATASSKGTLIRVFNTLDGSLLREVRRGADRADIYSLAFSSDAYWLGVSSDKGT IHVFSLKVDSGSLATLSSQRSLIAPTSNSSAGLGVSSLSILKGVLPKYFSSEWSVAQFRLPEGSHQYLVGFGLQKNTVVVIGLNGSFYRCEFDPVTGGDM KQLEHHNFLSADNFLSANNFLKVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10004501 [exp]	0	1
AT1G78810			unknown protein		Lus10028833 [exp]	16.1	0.5681
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10011348 [exp]	82.4	0.4818
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10024079 [exp]	130.2	0.4440

Compare expression of checked genes

Lus10004501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.