Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27680 849 / 0 RECQSIM RECQ helicase SIM (.1) AT1G31360 159 / 4e-40 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT3G05740 157 / 5e-40 RECQI1 RECQ helicase l1 (.1) AT4G35740 154 / 1e-38 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G60930 154 / 3e-38 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G10930 154 / 5e-38 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G27880 100 / 2e-21 DEAD/DEAH box RNA helicase family protein (.1) AT3G22330 57 / 5e-08 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT2G33730 57 / 6e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G61240 55 / 2e-07 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029898 [exp] 318 / 4e-103 AT5G27680 107 / 6e-27 RECQ helicase SIM (.1) Lus10042451 [exp] 169 / 6e-44 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 167 / 3e-43 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10034434 [exp] 168 / 8e-43 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 145 / 9e-36 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10015467 [exp] 146 / 1e-35 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 135 / 2e-32 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 133 / 1e-31 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10028387 [exp] 131 / 4e-31 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026400 [exp] 1001 / 0 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.013G161200 [exp] 187 / 9e-49 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G019800 [exp] 170 / 3e-44 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.005G107400 [exp] 159 / 3e-40 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.003G104300 [exp] 155 / 7e-39 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 148 / 3e-36 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.010G056500 [exp] 104 / 1e-22 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.012G045800 [exp] 57 / 7e-08 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 55 / 2e-07 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G023100 [exp] 55 / 2e-07 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10004503 pacid=23169698 polypeptide=Lus10004503 locus=Lus10004503.g ID=Lus10004503.BGIv1.0 annot-version=v1.0 ATGGCCGGAAGTAGTATAGCCTTAACTTTCGATGGCGCGATTGAAAAGCTGGTTGAGATGGGGTTCGAGAAGTCTGCCGCTGTGATGGCGGTGGATCGGG TATGTCCGTCATTGGACGCCGCCGTTGATTGTCTATTGAATGGTGGTAATCGCAAGTCCGGTGGTGCTTCGAGTAGTTCGAGAAGCTTTAATAGCAGTGA GAAAGTTCTTGGTAAAAGAGCTGCAGTAGCTTCCTCTGGTTTGGGTCCTAAGCGGCAATCCACCATTTTGGATCATTTTGATTCCGCTGGTGGATCCAAA AGGAGTAGAGTTAATAAGGATTTAGTACAGGTAGAGCCTCATTCGAGGATTGAGGTATCTTGCTCGGGTGCATTTGATAACCACCAGAAGGAGAATATGG AAGAGCATTTGCCAGTTTTCTGTTCTAGAGAGGTTGTAGATGTTGGTAGAGATTGGGAGGGGAGAGCTAACAGCATATTGCGGAAGCATTTCGGTTATCG ATCATTGAAGAGTTTTCAGAACGAAGCTTTAGCGGCTTGGATTGCTAACCAGGATTGTCTCATCCTTGCCGCAACTGGATCCGGTAAATCTCTGTGTTTT CAGCTTCCAGCATTGTTGACAGGGAAAGTTGTAGTTGTGATTTCACCATTGATAAGCTTGATGCATGATCAGTGCCTGAAGCTTTCAAAACATGGGGTGT CTGCATGCTTTCTTGGATCTGGACAACCAGATAGTAGCGTGGAGAAGAAAGCGATGAGAGGAGCGTACGATATAGTGTATGTCTGTCCAGAGACAGTTTT AAGACTGATAAAACCACTTCAAACTCTAGCAGAAACTCGCGGCATTGCTTTGTTTGCAATCGACGAAGCTCATTGTGTTTCTAAGTGGGGGCATGATTTT AGGCGAGACTACAGACGGATGTCTGTGCTGCGGGAAAACTTCAGTATGAGCAGTTTAAAATTCTTAACTTCTGATATCCCACTGATGGCATTGACTGCTA CTGCCACTGTTCCAGTTCGAGAAGACATTCTTCAATCTTTGAGGATGTCAAAGGATACAAAAGTAGTTCTTACTTCGTTCTTCAGATCAAACCTAAGATT CTCGGTAAAACATAGTAGGACCTCTTCTCCAACTTCTTATAGCTCAGATTTTCAGCAGCTGATTGAGATGTATACATCAAAGAAGAAGTGCAATGAAAAA AGACAAATTTTGCCATCAATGAGATTAAATGATCTGTCTGAGAGTTCTGTTTACGATAGCTCATCTGAGGAAGAAAGTAGCGATATGGAAGAACCTGTAG TTGATTCAACTAAAAGGAGTAAAACTCCTGCTTCAAAAATCAAAGAGATGTCAGTTGAATACTTGGAAAACGATGTTGATGTCTTTCAGGATGTGGATGA TTGGGATGTTTCACATGGAGAATTCTGTCGACGGTCTCCTTCGCCGGATCAGGAAGTGTCCTGTGAAGCAATTCATCCTCCTGAAAACCCAAGTGAAAGG CTAAAACTACTGGACGAGCAGTTGGAGGAAGGACTTACTATCATATATGTTCCTACAAGGAAAGAGACATTGAGAATTGCAAAGTATCTCTGTGGTTTAG GTGTAAAGGCTGCTGCTTATAATGCATCGTTGCCAAAATCACATCTACGAAGGGTCCACAAGGAGTTTCATGATAATGTGCTACAGGTTGTTGTGGCAAC GATCGCCTTCGGAATGGGGATTGACAAGCTGAACGTCCGAAGAATTATCCACTATGGATGGCCACAGAGTCTAGAGGCCTATTATCAAGAAGCAGGCCGT GCTGGAAGAGATGGAAAGTTGGCAGAATGCACACTGTATGCCAACCTCTCAAGACCACCATCACTGCTTCCAAACAAAAGAAGTGAAGAGCAGACAAAGC AAGCATACAAAATGTTGTCTGATGCCTTCAGGTATGGAATGAATACATCAAATTGCCGCTCTAAGACCCTTGTTGAGTACTTCGGAGAAGATTTCCTTCA TCAGAAGTGTCTTCTGTGCGACATATGTGTTGATGGGCCTCCCGCCTTGGAGAACGTGAAAGAGGAGGCCTATGTTCTGATGCAGGTTATCTCTTCGTAT CATCAACGAAGTGACCTGACCGAATACGCATATGACGATGATCTTATCGGTGATGGAAAACCACGGAGACGGTTGCAAAGGCCGGATGTTAGAACCTTCG TTAGTAAAATAAGAGAGCAGTTGCCGAAGTTTTCGACAACCGATCAGCTGTGGTGGCGAGGACTAGCTCGAATCCTTGAACAAAAAGGGTTCATAAAAGA GGGTGATAGCAAGGTCCATGTACAGATCAAGTACCCCGAACCAACAAAGCTAGGACTCGATATCCTGGAGTATGATAAGGAACAGCCTTTCAATATTCAC CCTGAAGCAGACATGCTGCTGTCAACGAACAGCAACAGAACTTACTCAAGTTTCGCAGAGTGGGGGAGAGGTTGGGCCGATCCGGAGATCCGTCGTCAGC GCTTATCGAGAAAGGGATCCTCGTCAAGGAAGAAGCCGAAAGAGTCGAGAAAGGGCCGAGGAAGGAAACACGGTAGGAAAAATCCGGACATGAGAACTGC AAGAGGTAGAATAGCAGCAAAGCTCTCCAGTCACTAG
AA sequence Show only first row Show all	>Lus10004503 pacid=23169698 polypeptide=Lus10004503 locus=Lus10004503.g ID=Lus10004503.BGIv1.0 annot-version=v1.0 MAGSSIALTFDGAIEKLVEMGFEKSAAVMAVDRVCPSLDAAVDCLLNGGNRKSGGASSSSRSFNSSEKVLGKRAAVASSGLGPKRQSTILDHFDSAGGSK RSRVNKDLVQVEPHSRIEVSCSGAFDNHQKENMEEHLPVFCSREVVDVGRDWEGRANSILRKHFGYRSLKSFQNEALAAWIANQDCLILAATGSGKSLCF QLPALLTGKVVVVISPLISLMHDQCLKLSKHGVSACFLGSGQPDSSVEKKAMRGAYDIVYVCPETVLRLIKPLQTLAETRGIALFAIDEAHCVSKWGHDF RRDYRRMSVLRENFSMSSLKFLTSDIPLMALTATATVPVREDILQSLRMSKDTKVVLTSFFRSNLRFSVKHSRTSSPTSYSSDFQQLIEMYTSKKKCNEK RQILPSMRLNDLSESSVYDSSSEEESSDMEEPVVDSTKRSKTPASKIKEMSVEYLENDVDVFQDVDDWDVSHGEFCRRSPSPDQEVSCEAIHPPENPSER LKLLDEQLEEGLTIIYVPTRKETLRIAKYLCGLGVKAAAYNASLPKSHLRRVHKEFHDNVLQVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR AGRDGKLAECTLYANLSRPPSLLPNKRSEEQTKQAYKMLSDAFRYGMNTSNCRSKTLVEYFGEDFLHQKCLLCDICVDGPPALENVKEEAYVLMQVISSY HQRSDLTEYAYDDDLIGDGKPRRRLQRPDVRTFVSKIREQLPKFSTTDQLWWRGLARILEQKGFIKEGDSKVHVQIKYPEPTKLGLDILEYDKEQPFNIH PEADMLLSTNSNRTYSSFAEWGRGWADPEIRRQRLSRKGSSSRKKPKESRKGRGRKHGRKNPDMRTARGRIAAKLSSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	0	1
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	1.0	0.9131
AT3G04480			endoribonucleases (.1)		Lus10027962 [exp]	3.0	0.8693
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	3.3	0.8691
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	3.5	0.9110
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	7.7	0.8900
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	8.0	0.8711
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	9.5	0.8558
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	9.5	0.8651
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	10.6	0.8844
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	10.6	0.8571

Compare expression of checked genes

Lus10004503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.