Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16130 404 / 3e-131 WAKL2 wall associated kinase-like 2 (.1) AT1G16160 394 / 5e-128 WAKL5 wall associated kinase-like 5 (.1) AT1G69730 395 / 4e-127 Wall-associated kinase family protein (.1) AT1G16120 391 / 1e-126 WAKL1 wall associated kinase-like 1 (.1) AT1G79670 390 / 3e-126 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16150 388 / 1e-124 WAKL4 wall associated kinase-like 4 (.1) AT1G21230 374 / 9e-120 WAK5 wall associated kinase 5 (.1) AT1G21210 373 / 2e-119 WAK4 wall associated kinase 4 (.1) AT1G21240 373 / 2e-119 WAK3 wall associated kinase 3 (.1) AT1G79680 373 / 5e-119 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008105 [exp] 1040 / 0 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10013143 [exp] 422 / 1e-144 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10034085 [exp] 381 / 3e-123 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 369 / 3e-118 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 344 / 2e-108 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013385 [exp] 297 / 1e-90 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10022488 [exp] 293 / 7e-90 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10013383 [exp] 293 / 1e-88 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 284 / 2e-85 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148432 [exp] 417 / 8e-137 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.018G148300 [exp] 416 / 2e-136 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.018G148498 [exp] 411 / 7e-136 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.018G148564 [exp] 412 / 1e-134 AT1G79680 505 / 2e-169 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.002G075901 [exp] 399 / 8e-133 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1) Potri.001G040756 [exp] 392 / 1e-131 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.003G185732 [exp] 396 / 2e-131 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.001G039200 [exp] 403 / 9e-131 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 402 / 2e-130 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.001G038525 [exp] 400 / 2e-130 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10004504 pacid=23169710 polypeptide=Lus10004504 locus=Lus10004504.g ID=Lus10004504.BGIv1.0 annot-version=v1.0 ATGGAGCAATATTCATCATTCATACTAACACTCTTCCTTTCCATGATTCTTCTCCCTAAAATTACTTCCCAGCAAGATTACATCGACAACACCATGCTGG GTTGTTCCTTCCCAGACTCACCTTCCATATCCAAAGGCTACCTCTGCAATGGAATCAAGACCGGTGAATGCCAGTTCTTCATGACTTTCCAATCCGCCCC GCCTAATTCCGAAACCCCTATCTCGATCGCCAACCTTCTGGGTTCGGACCCTTCAACGGTAGCTTCCATAAACAACATCTCATCCACCACAGACAGAATC CCGCCTGGCGGACGGATCATAGTACCCGTCTCTTGTTCCTGCTCAGGCAGCATCTACCAACACAACACTCTTTACACGGTCAGGGCGAGGGATACGTACT TCTCCATTGCCAACGACACTTTCCAAGGTCTCACAACTTGCCAGGCTCTGGAAGGCCAGAATTACTATGTTGCTACTAATCTTGAGGTGGGCACCGAGCT GACTGTTCCATTGAGGTGTGCCTGTCCGAGTCGGGATCAGGCTGCCAGTGGTGTTGTGTCCTTGTTGGGGTACATGGTAACATGGGGCGACTCGATTTCT TCGATCGCTCACCGGTTTGGGATCCATTATTCAAGGATCCTGATGGCCAATAGATTGGGGCATGGTAGTGTTCTCTTCCCATTTGGACAGCTTCTTGTCC CTCTTGATGGGGAGAGTTGTCAGGCTAATCCTGATAGCTTCTTCTGTGATTGTCGCGTCCCTGGAACCTGCATTTCCGACGGGAGAAAATTCCCTGCCAA GTTGGTAACGCTCCTAGGAATTGGGATTGGGATCGGACTACTGGGCACATCCCTGATACTCTACAAGCTGATTCAGTACCTGAAGAGAAGAAAGAAACAA ATCTACAAACAGAGGATGTTCAAGCAAAACGGCGGCGTTCTATTACAGCAAAAGCTCACCTCATACTCTGGATTAAACCATGAAAATGCAAAGTTGTTCA CAGAAGAAGAGCTGAAAAGAGCTACGGACAACTACAAAGAAAGCCGGTTTCTCGGTCAGGGAGGGTTCGGGACGGTGTACAAAGGAATGTTACCGGACGG AACCATCGTTGCGGTCAAGAAATCAAAGACCATAGACAGGACACAAATCCAGCAGTTTGTAAACGAGGTTGTCATTCTGTCTCAGATTAACCATAGGCAC ATTGTGAAGCTCCTAGGGTGCTGTCTGGAGACAGCACTACCATTGTTGGTGTACGAGTTCATCCCCAATGGTACGCTTTCCAGTCACATCCATGAATCGA CGTCTTGTGGTGTTCTTTCGTGGGAGGACCGGTTCAGAATAGCAGGGGAAGTTGCGGGAGCTGTTGCTTATATGCACTCTACAGCTTCGTTCCCGATCTA CCACCGTGACATCAAATCTTCAAACATACTGTTGGATGCCAAGATGAGTGCTAAAGTCTCCGACTTCGGTACCTCCAAGTCTATCCCTGATGACAAAACT CACCTTACCACCTTGGTTCAGGGCACATTCGGGTACTTGGATCCAGAGTACTTCCACACAAGCCAATTCACAGAGAAGAGCGATGTCTACAGCTTCGGAG TCGTACTCGTGGAGCTCCTGACAGGGCAGAAACCAGTCTCTTCCACCAGGGGCGAAGAAGAGAGGAGCCTCGTAGCACATTTCATCTCAGCAACTAAGGA GGAAGAAAGTCTGGTCAGGATTTTGGATCCTGTAGTAAGTCGAGAAGGTAGAGAATCAGATTTGGGATCCATTGCAGAGCTCGCTGTGAAATGTTTGAGG TTGAATGGTAAGAAAAGACCTACAATGCGAGAGGTGGCTATGGAGCTTGATGGGTTACGTAACTCACAGCGTTGCGTTCTGGCAATTGGCGACGAAGAAG AAGAATCCTTTGTGCGTAGGATGGAATATGATCAGTTTGACAGAGATGCATCCATGGAGGATAGCACATTGACAATAGAAGACAGGTAA
AA sequence Show only first row Show all	>Lus10004504 pacid=23169710 polypeptide=Lus10004504 locus=Lus10004504.g ID=Lus10004504.BGIv1.0 annot-version=v1.0 MEQYSSFILTLFLSMILLPKITSQQDYIDNTMLGCSFPDSPSISKGYLCNGIKTGECQFFMTFQSAPPNSETPISIANLLGSDPSTVASINNISSTTDRI PPGGRIIVPVSCSCSGSIYQHNTLYTVRARDTYFSIANDTFQGLTTCQALEGQNYYVATNLEVGTELTVPLRCACPSRDQAASGVVSLLGYMVTWGDSIS SIAHRFGIHYSRILMANRLGHGSVLFPFGQLLVPLDGESCQANPDSFFCDCRVPGTCISDGRKFPAKLVTLLGIGIGIGLLGTSLILYKLIQYLKRRKKQ IYKQRMFKQNGGVLLQQKLTSYSGLNHENAKLFTEEELKRATDNYKESRFLGQGGFGTVYKGMLPDGTIVAVKKSKTIDRTQIQQFVNEVVILSQINHRH IVKLLGCCLETALPLLVYEFIPNGTLSSHIHESTSCGVLSWEDRFRIAGEVAGAVAYMHSTASFPIYHRDIKSSNILLDAKMSAKVSDFGTSKSIPDDKT HLTTLVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGQKPVSSTRGEEERSLVAHFISATKEEESLVRILDPVVSREGRESDLGSIAELAVKCLR LNGKKRPTMREVAMELDGLRNSQRCVLAIGDEEEESFVRRMEYDQFDRDASMEDSTLTIEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	1.4	0.9735
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	1.7	0.9783
					Lus10021406 [exp]	3.9	0.9730
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	3.9	0.9572
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	5.7	0.9338
					Lus10021407 [exp]	5.7	0.9595
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	6.3	0.8966
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	6.5	0.9550
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	7.1	0.9005
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	7.7	0.9440

Compare expression of checked genes

Lus10004504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.