Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05470 567 / 0 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 403 / 2e-127 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 401 / 6e-125 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G54650 379 / 4e-118 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT2G43800 371 / 5e-115 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 327 / 8e-100 AFH3 formin 3 (.1.2) AT1G70140 314 / 4e-95 ATFH8 formin 8 (.1) AT1G59910 285 / 4e-83 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 243 / 7e-69 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 238 / 1e-67 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029897 [exp] 1205 / 0 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 673 / 0 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 660 / 0 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10008739 [exp] 404 / 6e-126 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 401 / 1e-125 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 403 / 2e-125 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10011524 [exp] 397 / 3e-124 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 390 / 3e-122 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011168 [exp] 351 / 2e-107 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017900 [exp] 633 / 0 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 620 / 0 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G054900 [exp] 413 / 5e-131 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 406 / 6e-128 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 409 / 2e-127 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 407 / 1e-126 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 397 / 2e-124 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.001G416100 [exp] 380 / 6e-118 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 375 / 4e-116 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 371 / 3e-115 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10004505 pacid=23169720 polypeptide=Lus10004505 locus=Lus10004505.g ID=Lus10004505.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTTCTTCTTCTTTTTGTTCCCACATTCTCTTGTTAATAATTATTTTGATGCTAATCTCATCATTGCAAAACGCCCACATTGCTT TAGCTGCTGCAAGGGGTCAGAAAGTATCTGGGGAGGATGAGAGTGAAAATGGAGAGCGAAAAACTGTGATAGTACTGCAAAAGTTGAGAGCTTTACTTGG GATTCCATGGATTCACCATTCCCCACACTATCCCATTTCAGAAAACTTGGCTCCAGCTCCAGCTCCAGCTCCAATGGTGCAATTTCATTCTCATCCTCCT CCATTGAAGCACCATCATCAGAGGAAACCGATTCCTGTACCGCAAATCGAAGAGAGAGCCGGAAACAATAACAACAAAGGGAGATTCAAAAGGATGCTAG TGGTAGTCATTGTGTCTTCTGGAGCTGCTGCATTGGTTGTTGCTGCACTTGTGCTTACCTGGGCCTTCTCTGGCAAGTTTAGGACGCAGCATCAAAGGGA ATCCGTAGGAACAATGTCGGTGATTCGAGGTAAGAAATGGAGGAGGGCTAGAGGTAAAAAATCCAAGTATGTAGCTTCCAAGGTGAGCTTAAACCCTGGC CGCGATTTCTTGTATCTGAATTCGTTATGTCGAGACTCGGAGCTAGAAGAAGCTCCGTGTCGGAAACACGCTACTGATGTAGTACTTAAACCACCACACT ACTCACCAAATTGTGTGCTGGCAGAAAGTGTTAGTAGTTCTTCTTCCGCCAGGGACATCACTTCTGTCCATGGATGTGATGAATCTGATGGAGAAAACTC TTGTGTTATTGGAGATAAAACTGTTCGAATCGACTGTTGTTCATCCGATGATGAATCGTTCCGTTCTTTTGCTGGGTCACATTCATCAAGCATCAGGCTT TCCAATGCTTCAGCTTCTAGTCCACTAAATGAGCCAAATGTTGTGAGCTTCGCAATCGGACCACCGCCACCTCCACCTCCACCGCCTCCTCCACCTCCAC ATTTGCCGCGGATATCTCCTCCGAGCGAGTCCTTGTGGCGTTCGAAGAGGATTACAACTACATTTCCAGATCTGTCATCTCCAAGAGGGAAAAGCTTACC TCTTTCACCTCAGAAATCTGCATCTGGAACTGGAATCCCTCAGCCGCCTTGTCCTCCTCCATTTATGAAGGGTCCTCCACCTCCTCCACCATCTTCTTAC ACGCCGTTGGGGAAAGATGGGACGCCATTGCCGAAACTGAAGCCGCTTCACTGGGATAAAGTGAGAGCACCACCAGATCAAAGAATGGTATGGGATAAGA TTAGATCAAGCTCATTTGAGTTAGATGAAGAGATGATCGAGTCGCTCTTCGGATACAACATGAGAAGTGTAAAGAAGAACGACGATATGAACAGCTGCAA AACCCCATCTCCGACAAGCAAGCATGTGTTGGATCCCAAAAGACTCCAAAACATCACCATTCTCTCAAAAGCTCTGAACTCCACTCCTGATCAAGTCTGT GATTCACTAATGAGAGGGGACGGTCTCTGCTTGCAGCAGCTAGAAGCTCTGGCGAGGATGGCACCAACCAAGGAAGAACAGTCGAAACTCTGCGAATACA AAGGCAACGTTAACGAATTAGGTTCAGCTGAGATATTCGTCAAGACATTGCTCGCTGTACCATTTGCATTCGATAGAGTCGAAGCAATGCTCTTTAGAGA AACCTTTGAAGACGAAGTTGTTCATCTCAGAAACTCCTTCTCAATGCTTGAGGAAGCATGCAAAGAGCTCAGATCAAGCAGACTATTCCTAAAGCTACTG GAAACAGTACTCAAAACAGGCAACCGAATGAACGTTGGGACGATCCGAGGAGACGCACGAGCATTCAAACTCGACGCACTCCTCAAACTCTCCGACGTTA AAGGCACAGACGGCAAAACAACTCTGTTTCATTTCGTCGTTCAGGAAATTAGTAGAACCGAAGGCGTGCGTGTTTCAGACAGCATAATCGGAACAACAAT CACAAACTCCAAACCGATAAGAACCGGCGAGGAAATGGAAGAGAATTACCGTCGATTAGGGCTGGACCTCGTCTCGGGACTAAGCAACGAGCTCTACAAC GTCAAGAAGACCGCTACAGTCGACCTGGACGTCCTCGCCACCTCCGTCTCGAATCTCTCGTCCGGGATCGTGAAGGTGACCCGCCTGATCATTCGTGATC AGCTCTGTTGTGGAGGAGAGTTGTTCGTCAGATCGATGAAGGGTTTCCTGCAACGTGCAGAGGCGGAGCTGAAGGAAGTGAAAGAGGAAGAGGATAGAGT GATGTCCATGGTTAGAGAAGTTACCGAGTACTTCCATGGCAATGTAGGGAAAGATGAAGCGAATCCGTTGAGGATTTTCGTGATCGTGAGGGATTTCTTG GGGATGCTTGACCATGTCTGTAAAGAACTGAGGAGCTCCAAGTCGTCTTGGAGCTCGAATCCGTTTCGGTAG
AA sequence Show only first row Show all	>Lus10004505 pacid=23169720 polypeptide=Lus10004505 locus=Lus10004505.g ID=Lus10004505.BGIv1.0 annot-version=v1.0 MASSSSSSSFCSHILLLIIILMLISSLQNAHIALAAARGQKVSGEDESENGERKTVIVLQKLRALLGIPWIHHSPHYPISENLAPAPAPAPMVQFHSHPP PLKHHHQRKPIPVPQIEERAGNNNNKGRFKRMLVVVIVSSGAAALVVAALVLTWAFSGKFRTQHQRESVGTMSVIRGKKWRRARGKKSKYVASKVSLNPG RDFLYLNSLCRDSELEEAPCRKHATDVVLKPPHYSPNCVLAESVSSSSSARDITSVHGCDESDGENSCVIGDKTVRIDCCSSDDESFRSFAGSHSSSIRL SNASASSPLNEPNVVSFAIGPPPPPPPPPPPPPHLPRISPPSESLWRSKRITTTFPDLSSPRGKSLPLSPQKSASGTGIPQPPCPPPFMKGPPPPPPSSY TPLGKDGTPLPKLKPLHWDKVRAPPDQRMVWDKIRSSSFELDEEMIESLFGYNMRSVKKNDDMNSCKTPSPTSKHVLDPKRLQNITILSKALNSTPDQVC DSLMRGDGLCLQQLEALARMAPTKEEQSKLCEYKGNVNELGSAEIFVKTLLAVPFAFDRVEAMLFRETFEDEVVHLRNSFSMLEEACKELRSSRLFLKLL ETVLKTGNRMNVGTIRGDARAFKLDALLKLSDVKGTDGKTTLFHFVVQEISRTEGVRVSDSIIGTTITNSKPIRTGEEMEENYRRLGLDLVSGLSNELYN VKKTATVDLDVLATSVSNLSSGIVKVTRLIIRDQLCCGGELFVRSMKGFLQRAEAELKEVKEEEDRVMSMVREVTEYFHGNVGKDEANPLRIFVIVRDFL GMLDHVCKELRSSKSSWSSNPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	0	1
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	1.0	0.9736
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	2.4	0.9711
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	3.5	0.9643
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	4.5	0.9616
AT5G51560			Leucine-rich repeat protein ki...		Lus10031702 [exp]	4.5	0.9507
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	5.2	0.9653
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	6.9	0.9582
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10014316 [exp]	8.5	0.9252
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	9.2	0.9553
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	9.6	0.9291

Compare expression of checked genes

Lus10004505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.