Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004506 pacid=23182174 polypeptide=Lus10004506 locus=Lus10004506.g ID=Lus10004506.BGIv1.0 annot-version=v1.0 ATGGCCGTACTGAATAACATTGTGGCTAAGAGTGGAGACAAAGCATTGGCACTAATAGTACCTTCATTCAAAGGTGCCAATTACAAAAATATACTCTCCC TCCAAGCACAACATTCTTACTTACTCAACTACTACTATTGCATAACCACAGTTCCAGGTTCACAAAAAGAAAAACTTGCTCTCTCTACATCGGGTGCTAC GACATTCTACGCTAACCCCAACATACCACAAATTGCAGGTTTCATAAGATACAATGACTTTCAAGGAGTTGAGGACCCAATTGAATATGATCCAACCGAC ATAGCACACCCTACAAAGGCCACTTTGAAGGAATTGAGTGACTACATTAACAATCCGGACAACCAGAAAATGGTACCTGAAACTCATAAAACTACTCAAC CTCCAAACAAGAACATAGAGGAACTTCAATCAATTACCACCAACGAAACCAATGTGTCGACACCGACACCTACCAACATCGAAGATGATCTCCTAGATGA TGATGATGTCCCAATTGCAAAATTACAAAGCAAAGAAAACAGGAGAAAGATCAAGGTGACGAAAGTGCTCGCTGATAGCTTAGCAGATGATCTCGGATAA
AA sequence Show only first row Show all	>Lus10004506 pacid=23182174 polypeptide=Lus10004506 locus=Lus10004506.g ID=Lus10004506.BGIv1.0 annot-version=v1.0 MAVLNNIVAKSGDKALALIVPSFKGANYKNILSLQAQHSYLLNYYYCITTVPGSQKEKLALSTSGATTFYANPNIPQIAGFIRYNDFQGVEDPIEYDPTD IAHPTKATLKELSDYINNPDNQKMVPETHKTTQPPNKNIEELQSITTNETNVSTPTPTNIEDDLLDDDDVPIAKLQSKENRRKIKVTKVLADSLADDLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004506 [exp]	0	1
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10030206 [exp]	2.8	0.6916
AT2G20840			Secretory carrier membrane pro...		Lus10031627 [exp]	8.9	0.7396
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10006219 [exp]	9.5	0.6986
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10021778 [exp]	12.5	0.7012
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	16.4	0.6407
AT2G24960			unknown protein		Lus10042715 [exp]	23.1	0.6807
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	25.1	0.6787
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	29.2	0.6355
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	31.0	0.6456
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10026180 [exp]	36.0	0.6344

Compare expression of checked genes

Lus10004506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.