Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017778 [exp] 125 / 8e-35 AT5G08020 75 / 3e-14 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10018804 [exp] 65 / 6e-13 AT1G75050 171 / 4e-71 Pathogenesis-related thaumatin superfamily protein (.1) Lus10015932 [exp] 64 / 2e-12 AT2G05642 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Lus10012660 [exp] 48 / 5e-07 ND 169 / 1e-48 Lus10004773 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004507 pacid=23182195 polypeptide=Lus10004507 locus=Lus10004507.g ID=Lus10004507.BGIv1.0 annot-version=v1.0 ATGACGATCAACACAATCAATGAGCTCAACACTAGGCCAGAGATGTGGATCTCACAAGTAAGGGTCAGTCGAAGTTGGGTGGCAACAAATCCCAAAAATG TTATCCTTCACAGAGATCTCACTCTCATGGATGAAAAGGGAGATGATATATGGGCTAAAGTGCCGCTACACCTCATGCCGAACTTTGAACACCTCTTACA GGAGCAAAAGGTGTACACTATTCGGGACTTCAGAGTGAAGCACACCCCAAAAGAATACAAACCCATTGAATTCTCAGCTACAACCATTGTGGAGGAAGTA GAAGACATGACCACCATTCCAAAACACAAATTCACATTCATCAAGGAAACTGAGATCGCAAGCAAGCTAGGAGACATAATGCTACTACACGGTAACAACG TTTCACTCATATAG
AA sequence Show only first row Show all	>Lus10004507 pacid=23182195 polypeptide=Lus10004507 locus=Lus10004507.g ID=Lus10004507.BGIv1.0 annot-version=v1.0 MTINTINELNTRPEMWISQVRVSRSWVATNPKNVILHRDLTLMDEKGDDIWAKVPLHLMPNFEHLLQEQKVYTIRDFRVKHTPKEYKPIEFSATTIVEEV EDMTTIPKHKFTFIKETEIASKLGDIMLLHGNNVSLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004507 [exp]	0	1
					Lus10005514 [exp]	5.1	0.8818
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	5.4	0.7497
AT1G30190			unknown protein		Lus10038508 [exp]	5.8	0.7145
					Lus10000529 [exp]	7.2	0.8818
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	8.8	0.8818
AT5G27260			unknown protein		Lus10007175 [exp]	10.2	0.8818
AT1G23980			RING/U-box superfamily protein...		Lus10022223 [exp]	11.1	0.6809
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Lus10018959 [exp]	11.2	0.6394
					Lus10008001 [exp]	11.4	0.8818
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	12.5	0.8818

Compare expression of checked genes

Lus10004507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.