Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47230 155 / 6e-39 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G26540 145 / 1e-35 Agenet domain-containing protein (.1) AT3G62300 140 / 3e-34 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G11420 138 / 1e-33 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G09320 121 / 2e-28 agenet domain-containing protein (.1) AT1G03300 115 / 3e-26 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT5G23800 106 / 1e-23 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1) AT5G23770 99 / 1e-21 ATDUF8 DOMAIN OF UNKNOWN FUNCTION 724 8 (.1.2) AT3G06520 96 / 2e-20 agenet domain-containing protein (.1) AT2G47220 95 / 4e-20 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010060 [exp] 1436 / 0 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10002437 [exp] 607 / 0 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10000430 [exp] 343 / 2e-109 AT3G62300 84 / 3e-17 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10000353 [exp] 157 / 2e-39 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 154 / 3e-39 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037805 [exp] 120 / 3e-28 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10017088 [exp] 120 / 3e-28 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10027325 [exp] 70 / 1e-13 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10010903 [exp] 71 / 2e-12 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117800 [exp] 411 / 8e-129 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.002G192300 [exp] 399 / 3e-124 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.005G011100 [exp] 139 / 1e-35 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 80 / 1e-15 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G151200 [exp] 67 / 7e-13 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.001G365800 [exp] 59 / 1e-08 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.009G072600 [exp] 53 / 9e-07 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G046800 [exp] 50 / 5e-06 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.009G155250 [exp] 45 / 2e-05 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.005G216200 [exp] 45 / 0.0001 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05266 [flax] [poplar] DUF724 Protein of unknown function (DUF724) CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10004508 pacid=23182179 polypeptide=Lus10004508 locus=Lus10004508.g ID=Lus10004508.BGIv1.0 annot-version=v1.0 ATGGTGAGCTCCATAGAAAAGGATCCCTCAGCCCACCACCGTTCCGCTCCCCACAAACACATTCCTCTCTTCCAACAAGGCCACGCTGTCGAGGTCAGCT ACGACGAGGAAGGCTTCTTCGGCGCTTGGTTTCCGGCAACCATCGTCGTGGAGTGTTCCGCCCCCAAGTCCATCACCACCAAGAAGAGGAAGAAGGTTGT CGTTCGTTACGACACCCTTCTCAAGGACGACGGCCGCACTCCCTTGACCGAGTCTGTCGACCCTGCTTTCATACGGCCCGTTCCTCCCGGCCAAGAGAAG CGCAGAGCAGGAGGAGTGAAGTTTGAAGTGAACGACGTCGTTGAGGCCAAGGATAGAGACGGCTGGTGGTCTGGTGTTGTCGGGAAGATTCTGGAAGGAG GGAAGCGGTACAGAGTTCTCTTCGATAACCCGCCGGATTTTCTTGACTGCGGGGAGAATGATCTGAGGTTTCGCTACGACTGGGTCTTCTGCAAGTGGGT TCGAGCTAAGAAACTGACAAGGAAGCCGTCAAAAGGAGAAGAGATTTTTGGCGCAGGAGCAGATGTTGAAGTGAACTTCGAGAAAGAAACTGTTGGTGAT ACTTGGCTTCCGGCAGTTGTCATAAAAAGGGGTGCGGATCAAACTTTCTTCGTTAAGTGTCAGGGGTTGGACAGTTTGGATGATGAAGTAGAAGTAGAAG CAACAAAGGAAGACGTTGTGGTTGTAGATTCGCAACATATTCGGCCGTCTCCTCCAAGCCATTCCCGTACAGACTATGAGTTGCTGGATCATGTTGATGG TCTGATTGCTGGGAGTTGGCAGAAGGGATTGGTTACTAAAGTTACTAAGGGAAAGTACACAGTCTACATTCATCAGCAGAAGGAAGACAAGGAGTTCAGC TTATCTCAACTTCGGCCTCATTTAGACTGGATTCATGGAGAATGGAGAAACAAATCAAAAGTTCAATCCAAGGGACTTGTCGTAGCCAATAGCAACACTA AGAAGCTGAATTTTGGTGATATTTCTGGTGAAAATGTTCAACTTGTTGTAGTTCCTGTTAGTACTGGTGCTTCCTGCGATAATATCAGCGACAAAATGCC TTGCTCCTCAACCACAAGGATCAAGATGGATGATTCGAGTATCTATGCTGAAAAGTCTGCTTCAGGTGGCTTTACCTCAAGCAATAAGAAGATGAAAGTA ATTTCTGACTTGAGTGGTAAGAAGTTGAGCCATCGTGACACCTTAATGGAAGGAGATGCTGGAGAGGCCCCATTATCTGTCAAAAGGCAAAAGGAACGTT CAACTCAAAAGGCGACTTCAAAGTTACAAAAGGAAAGGTTAACAACAAATGCAAAAAGTTCTCAGGATTGCAACCAGCTTTCTGCCAAGAGTAAGAAGAG ACAAGCAAATCTCGTCGACCTAGATTGTCAAAAAGTAGCCATGGTTGCCAGCATAGGTAGACGTCCTAAATCACCAGTTGGCACTTCCCTGGTTTCTGTA TCTGGTATGATATTACACATGCTTGAAATTCATTTGCCATTACTTGTGAAATGTATATCCCTTATTTTGGAGCGATTTCCAGATAAAGAAGGCAGTCCAG AGAATTGTTCTATTACACTTGGTAAGAGTGGCGAGGATGTACTCAAAGAAGGTGCCGGCCCTCTGATCTTAGGTTTGGGTGCAGTTCGGATGAGTCACTC TTCCAACTCTAGTCCTGCTCGAGCAGGTGACAGGCTGAATCCTTTGGGAGATAAAAAACGGGGGAGTGAGTCATCTGTAGAGCAAAGTTTGGAACGCAAA CAGCAGAAGACTGCAGTGAGTGACAGAAGAAAGAGGGAAAGCTCACTTAAATATTCTGACATAAATACAAAGATGGATGCTGGATCTATGAGTTTGGAGA CCATCGACAATGATAGTGATTGCAAGAAAATCGTTGTAAATGCCGTGACTGATGAGTTTGGAGGACAATTAGAACTAGATTTGGAATCTACAGCTCCACA AATTGAAGAATTGGAGAAGAGTGTGAATTCAGTAAATGAAGTTGAAACTGCCGTTGTTGGAGTGCCTGAGGGGGTTGCTGAAGCTGATCAACCTTTATCG TTGTGGTGTGGAGGGTTTTCAACTCCGATAAGTACATGTGAAGACGGACTGTCGAGTCCATCGGTTAATGGAAGCCACGCTAGGAAGAAAAGGCAGGTTG ATGCAGCCACTAATTCTGCTCCGATTAGTACGAATTCCAATGCTTTGCTGTTTGAGAAGAGGTCACCGCTTTGGGCGCCGCTTGACTCCATGGAGATATT CAAGATTCTCCCACAAAGACCACATTTCACACCTCTGAAGGCCTGTGAGGAGAAATACCGTGAAGGAGCAGCAATTGGTGTAATGGTAACGTTTACAAAC TTATTGGATGACATTTCCAAGCTTACAATATACGACTCCAAGAGCTCTTTCGAGGGCTGTCTAAAGAGCTTATCCGACTTTGAGAATCATGGATTTGACA TCTCTGTGCCACGAGGTCGCATAAACAAGTTGCTATCAATGAAAAATCAGCACATGGAGTGGTCGACTGAAGATGAGAATGCTGAAAGAGATGTGGATGA GCATGTTGAGGAGGACAGGAAGTTGGAAGCTAAGGTTAAGGAGTTGGAGGAGAAGATGTTGGCGTTACAGCAGACACTAGCTGCAGCAAAAGGAGAGATG GAGGGTAAAAAGGCGAAAACAGCGGTGGCGCAAGCCCAAGCGGATAAAATGAAGGGGCGGGTTGCTTATGCAAAAAGTGAGTTTGAACGGGTATCTAAGA GCGCTTGGAAATTACCCTAG
AA sequence Show only first row Show all	>Lus10004508 pacid=23182179 polypeptide=Lus10004508 locus=Lus10004508.g ID=Lus10004508.BGIv1.0 annot-version=v1.0 MVSSIEKDPSAHHRSAPHKHIPLFQQGHAVEVSYDEEGFFGAWFPATIVVECSAPKSITTKKRKKVVVRYDTLLKDDGRTPLTESVDPAFIRPVPPGQEK RRAGGVKFEVNDVVEAKDRDGWWSGVVGKILEGGKRYRVLFDNPPDFLDCGENDLRFRYDWVFCKWVRAKKLTRKPSKGEEIFGAGADVEVNFEKETVGD TWLPAVVIKRGADQTFFVKCQGLDSLDDEVEVEATKEDVVVVDSQHIRPSPPSHSRTDYELLDHVDGLIAGSWQKGLVTKVTKGKYTVYIHQQKEDKEFS LSQLRPHLDWIHGEWRNKSKVQSKGLVVANSNTKKLNFGDISGENVQLVVVPVSTGASCDNISDKMPCSSTTRIKMDDSSIYAEKSASGGFTSSNKKMKV ISDLSGKKLSHRDTLMEGDAGEAPLSVKRQKERSTQKATSKLQKERLTTNAKSSQDCNQLSAKSKKRQANLVDLDCQKVAMVASIGRRPKSPVGTSLVSV SGMILHMLEIHLPLLVKCISLILERFPDKEGSPENCSITLGKSGEDVLKEGAGPLILGLGAVRMSHSSNSSPARAGDRLNPLGDKKRGSESSVEQSLERK QQKTAVSDRRKRESSLKYSDINTKMDAGSMSLETIDNDSDCKKIVVNAVTDEFGGQLELDLESTAPQIEELEKSVNSVNEVETAVVGVPEGVAEADQPLS LWCGGFSTPISTCEDGLSSPSVNGSHARKKRQVDAATNSAPISTNSNALLFEKRSPLWAPLDSMEIFKILPQRPHFTPLKACEEKYREGAAIGVMVTFTN LLDDISKLTIYDSKSSFEGCLKSLSDFENHGFDISVPRGRINKLLSMKNQHMEWSTEDENAERDVDEHVEEDRKLEAKVKELEEKMLALQQTLAAAKGEM EGKKAKTAVAQAQADKMKGRVAYAKSEFERVSKSAWKLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	0	1
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	1.4	0.9064
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	1.7	0.8868
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	3.5	0.8534
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	4.2	0.8739
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	4.2	0.8907
AT5G36930			Disease resistance protein (TI...		Lus10039850 [exp]	5.0	0.8369
AT3G11590			unknown protein		Lus10017001 [exp]	6.3	0.8576
AT3G22430			unknown protein		Lus10041205 [exp]	7.5	0.8704
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	7.7	0.8789
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	8.9	0.8421

Compare expression of checked genes

Lus10004508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.