Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54250 823 / 0 HLM1, DND2, ATCNGC4 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) AT5G15410 511 / 2e-172 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) AT4G30360 321 / 2e-99 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G28260 314 / 2e-97 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G24610 307 / 4e-94 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT1G19780 303 / 2e-92 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT2G23980 302 / 7e-92 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT5G57940 300 / 9e-92 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT5G53130 300 / 1e-91 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G15990 299 / 2e-91 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030698 [exp] 487 / 3e-164 AT5G15410 854 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10005221 [exp] 445 / 2e-150 AT5G15410 680 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10026233 [exp] 325 / 8e-101 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10021461 [exp] 324 / 9e-101 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10042434 [exp] 324 / 3e-100 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10037394 [exp] 316 / 6e-98 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 316 / 3e-97 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 314 / 2e-96 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10039415 [exp] 307 / 5e-94 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G407800 [exp] 890 / 0 AT5G54250 972 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Potri.017G089800 [exp] 533 / 0 AT5G15410 1005 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.017G089900 [exp] 481 / 3e-161 AT5G15410 911 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.018G097600 [exp] 319 / 3e-99 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.009G010700 [exp] 313 / 2e-96 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 308 / 2e-94 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 307 / 5e-94 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 306 / 2e-93 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.013G108200 [exp] 301 / 7e-93 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.017G067000 [exp] 295 / 6e-90 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004509 pacid=23182198 polypeptide=Lus10004509 locus=Lus10004509.g ID=Lus10004509.BGIv1.0 annot-version=v1.0 ATGGACTCCCCCCATGATGCCAAACGTGCAACTCACTTGCAACACCTCACAAGGGACGACCACCACCACGATGATGACGATGAGGAATACGAGGAGGAGG ACGGGAGTACTGACGATGATGACGAATTCGACGAAGCCGGATACGCCACGGTGGAGGAACAACAGGCAGCGGCGGAGGTTTCCGACGGCGGTGGTGGTAG AAAAAGGAGTCGGAGGAGGAGCTGCACGAGTTCGTTCATGGCCTTCTTCGCCGCCGGCGGTAGTAAGAGTAGGCGGCGGAGGAAGCAGAGGGTTGGCGGA GGGGATTGGAACAGAGTGTATTTGGTGGTGTGCGCGATGGGTTTGTTTGTGGACCCGCTGTTCTTCTACGCACTCTCAATTAGCGACTCTTACATATGTC TCTTCATTGACGGCTGGTTCGCACTCACCGTGACGTCACTCCGTTGCATGAACGACCTTCTTCATCTCTTTAATATCTTCCTCCAGTTCACCGGCGACGG GAGGAGGGTTGTTGGTAACTCAGCCGGGTCGACCCGATACTTGAAGGATAAGAAGGGTTTATTCCTTGACCTCTTCGTCGTCCTCCCCTTACCACAGATT GTACTATGGGTGGCGATCCCATGGCTACTGGACGCAGGGGCAGTAACAGGGCTAATGACACTATTCCTGGTGATGTTTCTGCTGCAATACCTCCCCAAGA TATATCACTCCGTGTGCGTCCTCCGCCGCATGCAAGATCACTCCGGCTACATCTTTGGCACTGTTTGGTGGGGCATTTTCCTCAACTTAATTGCCTACTT TGTCGCTTCCCACGCAGCAGGAGGCTGCTGGTACTTGTTAGGAATCCAAAGGGCAGCAAAGTGTGTTGAAGAGCAATGCAGGGGAACGAGTGGGTGTAGT CTGAGTGTACTATCTTGCAAACAGCCAATATACTATGGAACCACCACAAGAAGCTTGAACAACATCATTGACAGCTCCAGAATCGCCTGGGCACACAACA ACCATACAAGATTCACTTGCCTCTCTTCCCCGGACCATTACAGCTATGGCGCTTACAAGTGGACTGTTCAGCTCGTCGCCAATGATAACCGTCTCGAGAA GATCCTCTTGCCCATCTTCTGGGGCCTCATGACCCTCAGCACATTTGGAAACCTGGAGAGCACGACGGAGTGGGTGGAAGTTGTGTTCAACATCATTGTC CTGACTGGTGGGGTCCTCTTGGTCACCATGTTAATCGGAAACATTAAGGTGTTCCTGAATGCGACAACATCGAAGAAGCAGGCAATGCAGTTAAAGATGA GGAACTTAGAGTGGTGGATGAGGAAGAGACAGTTGCCTGTAGGGTTCCGACAGAGAGTCCGGAACTACGAGCGGCAGAAATGGGCGGCGATGCGAGGCGT GGATGAGTGTGACATGATCAGAAACCTACCGGAAGGTCTCCGGCGGGATATCAAATATCACCTTTGCTTGGACTTGGTTAGACAAGTACCATTGTTTCAA CATATGGACGATTTGGTCCTGGAGAACATTTGTGACCGCGTCAAGTCACTTATATTCACTAGGGGCGAAACGATAACTAGAGAAGGAGATCCAGTGCACA GAATGCTATTCATAGTGCGCGGCCATCTCCAAAGCAGCCAAGTCCTCCGGGACGGCGTCAAGAGCTGCTGCATGTTGGGTCCAGGCAACTTCTGCGGCGA CGAGCTCCTCTCGTGGTGCCTCCGGCGTCCCTTCGTGGAGCGGCTTCCGCCATCTTCATCCACACTCATCACCTTGGAGACGACCGAGGCCTTCGGTCTG GAGGCTGACGACCTCAAGTACGTCACCCAGCACTTCCGTTACACTTTCGTCAAGGAGAAGGTCAAAAGAAGCGCCCGGTACTATTCCCCCGGGTGGCGGA CGTGGGCGGCGGTGGCCATCCAGCTGGCGTGGCGGCGGTACAAGCACCGTCTCACTCTGACGTCGTTGTCGTTTATCCGGCCTAGGAGGCCGCTGTCCAG GTGTTCGTCGCTGGGAGAGGACAGGCTCAGGCTTTACACGGCGTTGTTGACTTCGCCCAAGCCGAATCAGGATGATTTTGACTTTTGA
AA sequence Show only first row Show all	>Lus10004509 pacid=23182198 polypeptide=Lus10004509 locus=Lus10004509.g ID=Lus10004509.BGIv1.0 annot-version=v1.0 MDSPHDAKRATHLQHLTRDDHHHDDDDEEYEEEDGSTDDDDEFDEAGYATVEEQQAAAEVSDGGGGRKRSRRRSCTSSFMAFFAAGGSKSRRRRKQRVGG GDWNRVYLVVCAMGLFVDPLFFYALSISDSYICLFIDGWFALTVTSLRCMNDLLHLFNIFLQFTGDGRRVVGNSAGSTRYLKDKKGLFLDLFVVLPLPQI VLWVAIPWLLDAGAVTGLMTLFLVMFLLQYLPKIYHSVCVLRRMQDHSGYIFGTVWWGIFLNLIAYFVASHAAGGCWYLLGIQRAAKCVEEQCRGTSGCS LSVLSCKQPIYYGTTTRSLNNIIDSSRIAWAHNNHTRFTCLSSPDHYSYGAYKWTVQLVANDNRLEKILLPIFWGLMTLSTFGNLESTTEWVEVVFNIIV LTGGVLLVTMLIGNIKVFLNATTSKKQAMQLKMRNLEWWMRKRQLPVGFRQRVRNYERQKWAAMRGVDECDMIRNLPEGLRRDIKYHLCLDLVRQVPLFQ HMDDLVLENICDRVKSLIFTRGETITREGDPVHRMLFIVRGHLQSSQVLRDGVKSCCMLGPGNFCGDELLSWCLRRPFVERLPPSSSTLITLETTEAFGL EADDLKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	0	1
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	2.8	0.7863
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	5.3	0.7748
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	5.9	0.7869
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	6.7	0.8539
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	9.2	0.8139
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	11.0	0.7791
AT2G46940			unknown protein		Lus10038023 [exp]	12.8	0.7720
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	19.9	0.7369
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10006852 [exp]	20.2	0.7339
AT5G59960			unknown protein		Lus10004947 [exp]	20.6	0.8313

Compare expression of checked genes

Lus10004509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.