Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02400 346 / 7e-119 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 306 / 2e-103 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT2G34555 283 / 5e-94 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G30040 278 / 4e-92 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT1G78440 257 / 4e-84 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT4G10500 137 / 2e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 136 / 5e-37 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT5G07200 132 / 2e-35 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT4G16330 127 / 2e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G63600 124 / 8e-33 ATFLS5, FLS5 flavonol synthase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025016 [exp] 492 / 2e-176 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 478 / 1e-170 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 302 / 9e-102 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 292 / 2e-98 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 253 / 2e-82 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 176 / 7e-54 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10006350 [exp] 140 / 2e-38 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 139 / 2e-38 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 138 / 1e-37 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117300 [exp] 427 / 4e-151 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.002G191900 [exp] 427 / 7e-151 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 359 / 4e-124 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 340 / 1e-116 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.001G378400 [exp] 320 / 7e-109 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 315 / 3e-106 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 296 / 2e-99 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.015G002800 [exp] 141 / 4e-39 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 137 / 1e-37 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 136 / 2e-37 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004511 pacid=23182199 polypeptide=Lus10004511 locus=Lus10004511.g ID=Lus10004511.BGIv1.0 annot-version=v1.0 ATGGGAGTCCACGCCCCAAATTTACTCCGGACCAAGAAAGCCAGAGCCATCGGAATCCCGACCGTTGATCTCTCGCTGGACGGCTCAATCGTATCGGAGC AGATCGTTAACGCCTGCGGAGAACTCGGATTCTTCAAGGTCGTAAACCACGGCGTTGACATGGATGCAGTGGCGCGTTGGGAGGTCGAAGGTGCGAATTT CTTCTCGAAACCTGCCACGGAGAAGCAGAGGGCTGGACCTGCTTCTCCGTTCGGATACGGGTGCAAGAACATCGGCACCAATGGCGACATGGGCGAGCTT GAATACCTCACCCTTCATACCAATGCTGCATCTCTGTTTGACCGTTCGTTGACCATCTCTGTTCACCCTGAAACTTTCAGGTCAGCTGCGAATGATTATA TAGAAGAGGTGAAGGAATTAGCATGCGAGATTCTAGATCTAGCGGCAGAAGGGTTACAACTCTCGGATAAACATGTGTTTAGCCGCCTAATCAGGGATGC TAATAATGATTCGGTCATCAGGATCAATCACTATCCACTGTTAGAGTACAAAGGCAACCACCAGGAAAAAAGAATCGGCTTCGGAGAGCATTCGGACCCT CAGATATTGACCATCCTCCGATCCAACGATGTCCCTGGCCTTCAAGTTTGCACGGAGGATGGTCTGTGGGTCTCCGTCCCTTCCGATCCCTCCGCGTTTT ATGCCATCGTTGGTGACGCTTTTCAGGCATTGACGAATGGGAAGTTCAAAGGGGCGAGACACAGGGCACTGGCGAATGTAGGGAAGGCGAGGATGTCGAT GATGTATTTTGGGGCACCGGCGATGGACAGGTGGATATGTCCGGTGGCAGAGATGGTCTCCGCCGACAACAACTGTCAGTCGTATGTGGGTTTCAGTTGG GGGGAATTTAAGAAAGCTGCTTACTCCATGCGATTGGCTGATGCCCGTCTTGATCTTTTCAAAAACCCCCGACACCCCACCGACGTCTTACTTCATTAA
AA sequence Show only first row Show all	>Lus10004511 pacid=23182199 polypeptide=Lus10004511 locus=Lus10004511.g ID=Lus10004511.BGIv1.0 annot-version=v1.0 MGVHAPNLLRTKKARAIGIPTVDLSLDGSIVSEQIVNACGELGFFKVVNHGVDMDAVARWEVEGANFFSKPATEKQRAGPASPFGYGCKNIGTNGDMGEL EYLTLHTNAASLFDRSLTISVHPETFRSAANDYIEEVKELACEILDLAAEGLQLSDKHVFSRLIRDANNDSVIRINHYPLLEYKGNHQEKRIGFGEHSDP QILTILRSNDVPGLQVCTEDGLWVSVPSDPSAFYAIVGDAFQALTNGKFKGARHRALANVGKARMSMMYFGAPAMDRWICPVAEMVSADNNCQSYVGFSW GEFKKAAYSMRLADARLDLFKNPRHPTDVLLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	0	1
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	3.9	0.7658
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	4.9	0.6845
AT2G35612			unknown protein		Lus10034745 [exp]	15.3	0.6998
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	20.3	0.6856
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016895 [exp]	24.7	0.6258
AT3G19920			unknown protein		Lus10010181 [exp]	46.3	0.6416
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	57.6	0.6638
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	58.7	0.6461
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10027136 [exp]	64.5	0.6000
AT5G05370			Cytochrome b-c1 complex, subun...		Lus10021674 [exp]	69.0	0.6271

Compare expression of checked genes

Lus10004511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.