Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09330 235 / 3e-79 ECHIDNA, ECH unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010063 [exp] 271 / 2e-93 AT1G09330 308 / 1e-108 unknown protein Lus10031433 [exp] 228 / 6e-76 AT1G09330 315 / 6e-111 unknown protein Lus10010898 [exp] 227 / 7e-76 AT1G09330 313 / 2e-110 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006250 [exp] 236 / 2e-79 AT1G09330 330 / 2e-117 unknown protein Potri.005G010400 [exp] 235 / 3e-79 AT1G09330 328 / 2e-116 unknown protein Potri.002G191700 [exp] 186 / 5e-60 AT1G09330 240 / 6e-82 unknown protein Potri.014G116900 [exp] 123 / 2e-35 AT1G09330 158 / 1e-49 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05832 [flax] [poplar] DUF846 Eukaryotic protein of unknown function (DUF846)
Representative CDS sequence Show only first row Show all	>Lus10004514 pacid=23182182 polypeptide=Lus10004514 locus=Lus10004514.g ID=Lus10004514.BGIv1.0 annot-version=v1.0 ATGGATTTTAGCCAGGTACAATTTTCTTCTTCTTCCTCTTTCAGATTTGCGGTACCAAGTTTATCGATTGTGATTGGCTTCGGATCTCAAGACTTGATCT CACCACTTAGCTTACTCCGGAGATCTAATTTTGGATATGTAGACCCCTGGCGAGAACTATTCGAATCCGAAGACTTGCTTCTTCCATGTCCTCTTCAAGC AGCTCTAGCGTTCTACATACTGTCGGCTCTCTTCTTTGACAGTTTCGTCATTATCTTTGTGGTATCTGTGGTGCTTGCAGCGCTTGATTTCTGGGTTGTT AAGAATGTCAGCGGCCGGATATTAGTTGGTCTGAGGTGGTGGAATGAGATTAACGAGGAAGGGGAAAGCGTGTGGAAGTTTGAGAGCCTTGACCAACAGT CTTTGGCAAGGATTAACAAGAAGGATTCATGGCTGTTTTGGTGGACATTGTACCTTAATGCAGCTGGTTGGATTGTCCTCGGTGTGTTTTCCGTTATAAG GTTTGAGGTTGACTATGTCCTGGTAGTTGCTGTCTGTTTGAGCCTCAGCATTGCAAACATAATTGGGTTCACCAGATGCCAGAAAGATGCTAAGAAGCAG ATCCAAGCATTTGCTAGTCAGACGATTGCAACTAGGTTTTCATCGACTCTGCAGTCTGCCTTCAGTGTGGTTTGA
AA sequence Show only first row Show all	>Lus10004514 pacid=23182182 polypeptide=Lus10004514 locus=Lus10004514.g ID=Lus10004514.BGIv1.0 annot-version=v1.0 MDFSQVQFSSSSSFRFAVPSLSIVIGFGSQDLISPLSLLRRSNFGYVDPWRELFESEDLLLPCPLQAALAFYILSALFFDSFVIIFVVSVVLAALDFWVV KNVSGRILVGLRWWNEINEEGESVWKFESLDQQSLARINKKDSWLFWWTLYLNAAGWIVLGVFSVIRFEVDYVLVVAVCLSLSIANIIGFTRCQKDAKKQ IQAFASQTIATRFSSTLQSAFSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	0	1
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	1.0	0.9664
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	2.4	0.8885
AT1G69980			unknown protein		Lus10010734 [exp]	2.8	0.8771
AT3G58800			unknown protein		Lus10007354 [exp]	4.5	0.8753
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	4.7	0.8925
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	5.2	0.8492
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	7.3	0.8675
AT5G10780			unknown protein		Lus10040473 [exp]	7.5	0.8589
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10020106 [exp]	7.7	0.8114
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10042480 [exp]	8.0	0.8342

Compare expression of checked genes

Lus10004514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.