Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 107 / 6e-27 Plant protein of unknown function (DUF247) (.1) AT3G50150 101 / 4e-25 Plant protein of unknown function (DUF247) (.1) AT3G50170 99 / 6e-24 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 97 / 1e-23 Plant protein of unknown function (DUF247) (.1) AT3G50130 96 / 3e-23 Plant protein of unknown function (DUF247) (.1) AT4G31980 95 / 1e-22 unknown protein AT3G50140 92 / 9e-22 Plant protein of unknown function (DUF247) (.1) AT3G50180 90 / 6e-21 Plant protein of unknown function (DUF247) (.1) AT5G11290 89 / 8e-21 Plant protein of unknown function (DUF247) (.1) AT2G44930 87 / 9e-20 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010064 [exp] 298 / 3e-100 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 259 / 4e-85 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 159 / 1e-46 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 149 / 6e-43 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 128 / 8e-35 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 123 / 5e-33 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 117 / 5e-31 AT4G31980 251 / 5e-76 unknown protein Lus10006802 [exp] 106 / 6e-27 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 98 / 8e-24 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146700 [exp] 160 / 2e-47 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 155 / 1e-45 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 155 / 5e-45 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 126 / 2e-34 AT4G31980 217 / 1e-63 unknown protein Potri.013G146600 [exp] 122 / 4e-33 AT4G31980 236 / 1e-70 unknown protein Potri.003G159400 [exp] 110 / 2e-28 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 109 / 3e-28 AT4G31980 232 / 3e-69 unknown protein Potri.018G029800 [exp] 105 / 1e-26 AT4G31980 317 / 1e-101 unknown protein Potri.003G181800 [exp] 104 / 3e-26 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 104 / 4e-26 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10004515 pacid=23182177 polypeptide=Lus10004515 locus=Lus10004515.g ID=Lus10004515.BGIv1.0 annot-version=v1.0 ATGGAAAGATCGGCGACGAAAAACAGGGGAAAGCTGAAGAAGAAGAATAAGAAGAAATATTGGGATCTAATCCGCTCAGCCAAAGAGCTGAAAACATCCG GGATCAAGTTCAGGAAAGATACGACCAACACCCATCTGTTGGACATGTCTTTCAAAGGCAGCGTGTTCAAGATCCCGCCGCTGAGAGTACACGATTCGAC ATACTCGGTGCTGAGGAATATGATGGCGTATGAGCAGTTCTCGCACGGAAGCGGGCAGTACTTGAGTTCGTACGTGATGCTGATGGACAGACTGATCGAT ACGAAGGAGGATGTCCAGATACTGGAGTGGCGAGGGATCATCAACAACGAATTGGGAGATGCGGAGAATGCGTCGAGTTTGTTGAATGCGATGTGCAAGG AGATTGTGTTCAAAGAGTTTTACTATGATGGACTGTGTGAGGAGGTGAACCGTTACTGTAAGACGTGGGGGCAGAGCTCCAAGGTTTACTTCAAGAGTGT GTATCTGAAAAACCTTTGGACGATTGTCCTTGGTTATTGTTGGTTGGGTGCTTGCTGCTACTGCTATCCAAACTGTTTACGCTGTTATGGACTACTATAA
AA sequence Show only first row Show all	>Lus10004515 pacid=23182177 polypeptide=Lus10004515 locus=Lus10004515.g ID=Lus10004515.BGIv1.0 annot-version=v1.0 MERSATKNRGKLKKKNKKKYWDLIRSAKELKTSGIKFRKDTTNTHLLDMSFKGSVFKIPPLRVHDSTYSVLRNMMAYEQFSHGSGQYLSSYVMLMDRLID TKEDVQILEWRGIINNELGDAENASSLLNAMCKEIVFKEFYYDGLCEEVNRYCKTWGQSSKVYFKSVYLKNLWTIVLGYCWLGACCYCYPNCLRCYGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	0	1
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	2.0	0.9566
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	4.0	0.9469
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	4.2	0.9635
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	7.0	0.9479
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	12.4	0.9498
AT3G01430			unknown protein		Lus10014527 [exp]	12.8	0.9498
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10043336 [exp]	13.7	0.9369
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	14.8	0.9419
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	15.2	0.9497
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	18.2	0.9284

Compare expression of checked genes

Lus10004515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.