Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 231 / 1e-70 Plant protein of unknown function (DUF247) (.1) AT3G50150 231 / 5e-70 Plant protein of unknown function (DUF247) (.1) AT3G50170 219 / 2e-65 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 219 / 2e-65 Plant protein of unknown function (DUF247) (.1) AT4G31980 216 / 5e-63 unknown protein AT3G47250 208 / 8e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50140 207 / 8e-61 Plant protein of unknown function (DUF247) (.1) AT3G50130 207 / 1e-60 Plant protein of unknown function (DUF247) (.1) AT3G50180 205 / 2e-59 Plant protein of unknown function (DUF247) (.1) AT3G44710 202 / 5e-59 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010065 [exp] 877 / 0 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 700 / 0 AT4G31980 251 / 5e-76 unknown protein Lus10039780 [exp] 424 / 4e-146 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 376 / 2e-127 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 300 / 3e-97 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 299 / 1e-96 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 243 / 1e-74 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 240 / 9e-74 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 228 / 2e-69 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 358 / 1e-119 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 348 / 2e-116 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 323 / 1e-106 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 299 / 2e-97 AT4G31980 236 / 1e-70 unknown protein Potri.013G146300 [exp] 297 / 1e-96 AT4G31980 217 / 1e-63 unknown protein Potri.018G029800 [exp] 260 / 2e-82 AT4G31980 317 / 1e-101 unknown protein Potri.017G145100 [exp] 250 / 4e-78 AT4G31980 225 / 1e-66 unknown protein Potri.007G013800 [exp] 246 / 2e-76 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 243 / 4e-75 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 241 / 4e-75 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10004516 pacid=23182187 polypeptide=Lus10004516 locus=Lus10004516.g ID=Lus10004516.BGIv1.0 annot-version=v1.0 ATGGACAACGTACCAAGAGCCAACGCCGGTGCCAGCCAAGTTCCGGAACAATTGCTGCTCAGAATTCGATCAGGCTTAGAGAGTGTGCTCCCTCGTTCAT CAAGCTCGAGCATCTTCACCGTCCCGAACAAGCTCTGCGCAGCTAAGCCCGACGCCTACACTCCTCATGTCCTCTCAATCGGACCTTTCCACAACGGCCG CCCTAACCTCGCCGGAATGCAGACTCACAAATGGCGGTATACGCTCTCCTTGCTTGACCGAACCGAGGATGCAGCTCCCACAATGGAATCCTGCCTCAAG GCAATTCTCGGATTCGAATCCGAGGTCCGATCTTGCTACTCCGAATCTATTAGCCTCGATTCGTTGCAGCTAGCCGAGATTCTTTTCCTCGACGGCTGCT TCATCCTCGAGCTCTTCCTTCGGTACCGGAAGATCGAGCCGAATCTGAAACACGGCGATTTGAAGAACGATCCAATTTTCACTACCTCGTGGATAATTTC CACGTTACAGAGGGACATGGCGCTGCTGGAGAATCAGATTCCGTTCTTTGTTCTTGAATGGCTATTTGATTACACAGTCCGCCGGAGCTCCAGCGGCTTG CTCTCGGTTCCGTTGACGAATATCGCGCTCCGATTTTTTGAATCCACGGGATCGCTGATGAGAACTCCGACAGCAACGGGGAGAACGGAGGCTAATTCGA TTGGGATCTCGAGCAGGCAGAGCACCAAACACCTGCTCCACTTGATCCACATCAGCCAGTCGCCTAATTCCTCTACGAAAACAGAGCCAAACAGGGAGAT CGGAAGCGCAGCAGGAGCGTCCTCGATGGCGGAGTTCGTGCCGTCGATTGAAGAGCTTTATTCTGCGGGGATCACGATCCAGATGAGTTCGGCGAGGAAA TCAATGTTCGAGGTGGAGTTCAAGGAGACGGTGTTGAATATCCCGCAGATCCGGATCCTGGATTCGACCGACGCTCTGTTGAGGAACCTGGTGGCGTTCG AGCAGTGCTTCCATGGCTGCCAGCAGTACGTGACGTCTTATGTGGTGCTGATGAACCAGCTGGTTTACACTCTCAAGGATGTGGAGCTTTTGGAGCAGAA CGAAATCGTGGAGAACTATCTAGGGAGCAGGGACGACGTGCCGTCTCTGTTTGATGAGATCTGCAAGCAAGCCGGACTCCAGGAATTCTATTTCGCCGGA TTGTGTAGAGATCTGAATAGTTTCTACGATCGGCCATGGATTAGGTCGAAAGTGTTTCTGAAGCGGGATTATTTTACTTCGCCGTGGACGCTTGTCTCTG CGCTTGCTGTTTTCTTGATCGTCACCATGGCTGTTGTCCAGACGGTCTACACAGTTCTTTCCTATTACTCCCGGTCGAAATAA
AA sequence Show only first row Show all	>Lus10004516 pacid=23182187 polypeptide=Lus10004516 locus=Lus10004516.g ID=Lus10004516.BGIv1.0 annot-version=v1.0 MDNVPRANAGASQVPEQLLLRIRSGLESVLPRSSSSSIFTVPNKLCAAKPDAYTPHVLSIGPFHNGRPNLAGMQTHKWRYTLSLLDRTEDAAPTMESCLK AILGFESEVRSCYSESISLDSLQLAEILFLDGCFILELFLRYRKIEPNLKHGDLKNDPIFTTSWIISTLQRDMALLENQIPFFVLEWLFDYTVRRSSSGL LSVPLTNIALRFFESTGSLMRTPTATGRTEANSIGISSRQSTKHLLHLIHISQSPNSSTKTEPNREIGSAAGASSMAEFVPSIEELYSAGITIQMSSARK SMFEVEFKETVLNIPQIRILDSTDALLRNLVAFEQCFHGCQQYVTSYVVLMNQLVYTLKDVELLEQNEIVENYLGSRDDVPSLFDEICKQAGLQEFYFAG LCRDLNSFYDRPWIRSKVFLKRDYFTSPWTLVSALAVFLIVTMAVVQTVYTVLSYYSRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50150			Plant protein of unknown funct...		Lus10004516 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	2.6	0.9460
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	6.6	0.9425
					Lus10019190 [exp]	7.1	0.9279
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	7.5	0.9395
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002302 [exp]	7.5	0.9337
					Lus10002465 [exp]	8.8	0.9408
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	12.0	0.9368
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	12.2	0.9374
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	14.1	0.9280
					Lus10008301 [exp]	21.7	0.9290

Compare expression of checked genes

Lus10004516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.