Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31500 450 / 8e-155 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26300 397 / 4e-134 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT4G13770 396 / 2e-133 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26310 395 / 2e-133 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26210 395 / 4e-133 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26330 391 / 1e-131 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 384 / 7e-129 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13080 382 / 6e-128 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G57260 379 / 6e-127 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G48270 376 / 7e-126 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010066 [exp] 870 / 0 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 753 / 0 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 657 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033172 [exp] 636 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 594 / 0 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 573 / 0 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033173 [exp] 571 / 0 AT4G31500 462 / 3e-159 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 541 / 0 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012400 [exp] 504 / 8e-176 AT4G31500 458 / 8e-158 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025300 [exp] 572 / 0 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 562 / 0 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 561 / 0 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 559 / 0 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 555 / 0 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 553 / 0 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026300 [exp] 541 / 0 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 519 / 0 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.008G184400 [exp] 409 / 2e-138 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184000 [exp] 405 / 6e-137 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10004517 pacid=23182200 polypeptide=Lus10004517 locus=Lus10004517.g ID=Lus10004517.BGIv1.0 annot-version=v1.0 ATGTCATACCTCATTTATTTTCTCCTAGCTCTACCAATATTGGTCCTATCATTTCTTCTCCACACGAAAACTAGTCTACAAAATGCTGCATCATCTCTCC CGCCCGGCCCTCCCGGCCTCCCTTTCCTAGGAAACCTCCTCCACTTTGATGCCTCGGCCCCTCACCGCTACCTATGGGACCTCTCTCGGACATTCGGACC CTTAATGTCCCTCAGACTAGGCCGCGTCCCCATCGTCATAGTCTCCAGCGCCGAAATGGCCGAACAAGTCATGAAAACACACGACCTTATATTCTGTAGC AGGGCTTCCACGGTTGGCCTTAAAAAGATGAGCTACAACTGCCTTGACTTGGTTTGCGCTCCCTACGGCGCTTACTGGCGAGAGATGAGGAAGGTATGCG TCGTTCATCTCTTCAACTCCATTAAGAGCCAGAGCTTCGCTCCCATTCGAGAGTACGAGGTTTCCAAATTGATCGACAAGATATCGTCCTCATCGTTGTT GTCGACCAAGCCTAGTACTTTCGACTTGTCCGAGGCTATGATGTCTCTGACGAGTACGATCACTTGTCGGATGGCTTTTGGGAAGAGGATTGATGAGAGA AGCGGGTTCAAGTCTCTGCTTAATGAATCTCAGGCCATGTTTACGAGCTTCTTTTTTGCTGACTATATTCCTGCCTTGGGTTTCGTTGATAAGCTCACCG GATTGACTCGTCGTCTCGACAAGAATTTCGAGGAGCTTGACCGATTCTATCAAGAAATAATTGATGAACATCTTGATCCAAATCGAGGCAAGCCGGAACA AGAGGACATTCTGGATGTTCTTCTTCAGATTTTGAAGGACCCGTCGTTCAAAGTACAGTTGACATTCGACCACATCAAAGCAATTCTCACGGACATTTTC ATAGCTGGAACAGATACAAGTGCGATAACAGTGGTATGGGTAATGACATACCTGATGAAGCACCCTAGCGTGATGAGTAAAGCTCAAGAAGAAGTGAGAC AAAAAATTGGCAACAAGGGTTTCGTGAACGAAGAAGACATCCACCAACTATCCTACCTAAAAGCTGTAGTTAAAGAGGTACTGAGACTGCAACCAGCAGC TCCATTGTTGGTTCCAAGGGAATCGACTGAGAAATGTTGGCTAGGCGGGTACGAAATACCGGCCAAGACTATAGTCCACGTGAACGCATGGGCCATTGGA AGGGATGTTGAAGCATGGGGAGGAGATGCAGAGGAGTTCAAGCCGGAAAGGTTCGTAGGGAAGTCTATCGATGTGAAAGGCGCGAACTTCGAGCTAATAC CATTCGGAGCGGGAAGAAGAATATGTCCTGGGTTGTACATAGGGATTTCGACTGTGGAGCTTTCTCTAGCTAATTTAATCTACGCTTTTAGTTGGGATAC TCCTGCTGGAATGGAGGACCAAGTTTTGGACATGAATGTGCTCCCGGGCATTGCTATGCACAAGAAAAATCCTCTACTCTTGGTGCCTACAAAATGGTTG TAG
AA sequence Show only first row Show all	>Lus10004517 pacid=23182200 polypeptide=Lus10004517 locus=Lus10004517.g ID=Lus10004517.BGIv1.0 annot-version=v1.0 MSYLIYFLLALPILVLSFLLHTKTSLQNAASSLPPGPPGLPFLGNLLHFDASAPHRYLWDLSRTFGPLMSLRLGRVPIVIVSSAEMAEQVMKTHDLIFCS RASTVGLKKMSYNCLDLVCAPYGAYWREMRKVCVVHLFNSIKSQSFAPIREYEVSKLIDKISSSSLLSTKPSTFDLSEAMMSLTSTITCRMAFGKRIDER SGFKSLLNESQAMFTSFFFADYIPALGFVDKLTGLTRRLDKNFEELDRFYQEIIDEHLDPNRGKPEQEDILDVLLQILKDPSFKVQLTFDHIKAILTDIF IAGTDTSAITVVWVMTYLMKHPSVMSKAQEEVRQKIGNKGFVNEEDIHQLSYLKAVVKEVLRLQPAAPLLVPRESTEKCWLGGYEIPAKTIVHVNAWAIG RDVEAWGGDAEEFKPERFVGKSIDVKGANFELIPFGAGRRICPGLYIGISTVELSLANLIYAFSWDTPAGMEDQVLDMNVLPGIAMHKKNPLLLVPTKWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	0	1
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	1.0	0.9647
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	2.2	0.9541
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	2.4	0.9538
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	3.2	0.9614
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	3.5	0.9546
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	3.9	0.9553
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	6.7	0.9384
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	6.9	0.9450
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	7.0	0.9527
AT3G50150			Plant protein of unknown funct...		Lus10004516 [exp]	7.5	0.9395

Compare expression of checked genes

Lus10004517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.