Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02520 637 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 626 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT3G62150 623 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT4G01830 619 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT2G47000 609 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G01820 588 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G18050 573 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 559 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT2G36910 404 / 4e-129 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 403 / 1e-128 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010068 [exp] 773 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 706 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 701 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 615 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 609 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038050 [exp] 606 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010012 [exp] 594 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010074 [exp] 555 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004530 [exp] 550 / 0 AT1G02520 682 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 671 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 658 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 645 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 644 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 638 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 630 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.010G003000 [exp] 606 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 584 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.003G094400 [exp] 406 / 5e-130 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 405 / 8e-130 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10004519 pacid=23182184 polypeptide=Lus10004519 locus=Lus10004519.g ID=Lus10004519.BGIv1.0 annot-version=v1.0 ATGAAAGGATTCAGTGCAGATGCAAAGATGATGTATGAAAAGGCGAGCCAAGTTGCGAGCGATGCAGTTGGGAGCATAAGAACAGTTGCATCATTCTGTG CAGAAGAGAAGGTGATGGAGCTGTATGGAAAGAAATGTGAAGGACCCAGAAAGACAGGAATTAGGGCAGGTCTAATCAGTGGAACTGGTTTTGGAGTGTC ATACTTTTTGCTGTATTGTTTCTATGCAACCAGCTTTTATGCAGGTGCTCAGCTTGTTAAACATCACAGAGCTACATTCGCTGATGTTTTCCAGGTTTTC TTTGCTCTCACATTGGCAGCTGTTGGATTATCTCAGTCAAGCTCCTTTGGACCTGATGCCTCCAAGGCCAAAACTTCAGTTTCTTCCATTTTCTCAATAG TAGATAGGGAATCGAAGATAGATCCGAATGACGAATCAGGAGCAACATTAGACACTGTGAAAGGAGACATTGAACTCAGACACATAAGCTTTCGCTACCC TTCTAGGCCTGATGTTCAAGTTTTTAGGGACCTCAGCTTGGCTATTCATTCTGGCCAGACTGTTGCTCTAGTTGGAGAGAGTGGGAGCGGGAAATCCACA GTTATTGCTTTGCTTCAAAGGTTTTATGATCCTGATTCAGGCAGGATAACTCTTGATGACGTGGAAATCCAGACCCTGAAGATCAAGTGGCTTAGACAGC AGATGGGACTTGTGAGCCAAGAACCTGTTTTGTTCAATGACACGATTCGTGCCAACATTGCTTATGGGAAGCAAGGAGATGCAACCGAGAACGAAATCGT GTCAGCATCAGGCCTAGCAAATGCACACAAGTTCATCAGTAGCCTACAACAGGGATATGATACGATGGTAGGGGAGCGAGGAGTGCAACTATCCGGTGGC CAAAAGCAACGTGTAGCCATTGCTCGCGCCATCGTTAAAGATCCAAAGATATTGCTGCTAGATGAGGCGACCAGCGCTTTGGATGCAGAATCGGAGAAAG TGGTGCAAGACGCATTAGACAGAGTGATGGTGAACAGGACGACAGTGGTGGTGGCTCATCGACTATCGACAATAAAGAATGCAGATGTGATTGCGGTGGT GAAAAATGGAGTGATCGCTGAGAAAGGAAGGCATGAAAGTTTGATGAAGATAAAAGATGATGAGGCGACTAGTGCTTTGGATGCAGAATCGGAGAAAGTG GTGCAAGACGCATTAGACAGAGTGATGGTGAACAGGACGACAGTGGTGGTGGCTCATCGACTATCGACAATAAAGAATGCAGATGTGATTGCGGTGGTGA AAAATGGAGTGATCGCTGAGAAAGGAAGGCATGAAAGTTTGATGAATATAAAAGATGGTGTTTATGCATCCTTTGTGGCGCTTCACACCAGTGCATCCAT TACTTAG
AA sequence Show only first row Show all	>Lus10004519 pacid=23182184 polypeptide=Lus10004519 locus=Lus10004519.g ID=Lus10004519.BGIv1.0 annot-version=v1.0 MKGFSADAKMMYEKASQVASDAVGSIRTVASFCAEEKVMELYGKKCEGPRKTGIRAGLISGTGFGVSYFLLYCFYATSFYAGAQLVKHHRATFADVFQVF FALTLAAVGLSQSSSFGPDASKAKTSVSSIFSIVDRESKIDPNDESGATLDTVKGDIELRHISFRYPSRPDVQVFRDLSLAIHSGQTVALVGESGSGKST VIALLQRFYDPDSGRITLDDVEIQTLKIKWLRQQMGLVSQEPVLFNDTIRANIAYGKQGDATENEIVSASGLANAHKFISSLQQGYDTMVGERGVQLSGG QKQRVAIARAIVKDPKILLLDEATSALDAESEKVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIAEKGRHESLMKIKDDEATSALDAESEKV VQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIAEKGRHESLMNIKDGVYASFVALHTSASIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	0	1
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10004520 [exp]	1.7	0.9276
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004672 [exp]	2.4	0.9418
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10004227 [exp]	7.9	0.8898
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	9.6	0.9334
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	15.7	0.9150
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	16.0	0.9213
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	16.5	0.8990
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	20.4	0.9271
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	20.6	0.8282
AT5G41761			unknown protein		Lus10012634 [exp]	21.6	0.9183

Compare expression of checked genes

Lus10004519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.