Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62240 734 / 0 C2H2ZnF RING/U-box superfamily protein (.1) AT2G47090 605 / 0 C2H2ZnF zinc ion binding;nucleic acid binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010069 [exp] 1402 / 0 AT3G62240 810 / 0.0 RING/U-box superfamily protein (.1) Lus10038048 [exp] 795 / 0 AT3G62240 714 / 0.0 RING/U-box superfamily protein (.1) Lus10009987 [exp] 767 / 0 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189700 [exp] 937 / 0 AT3G62240 818 / 0.0 RING/U-box superfamily protein (.1) Potri.014G114900 [exp] 937 / 0 AT3G62240 830 / 0.0 RING/U-box superfamily protein (.1) Potri.013G004200 [exp] 481 / 2e-158 AT3G62240 501 / 3e-166 RING/U-box superfamily protein (.1) Potri.005G004600 [exp] 410 / 4e-132 AT3G62240 497 / 2e-165 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004521 pacid=23182194 polypeptide=Lus10004521 locus=Lus10004521.g ID=Lus10004521.BGIv1.0 annot-version=v1.0 ATGGATGATAGTTGTGCTGTTTGCGCTGATTCCTTGGAATGGGTCTGTTATGGCGCTTGTGGCCATCGCGAGGTTTGCTCTACCTGCGTCGCTCGTCTCC GTTTCATCATCGAGGATCGACGATGCTGCATCTGCAAGACGGAGTCCAATGTTGTTTTCGTCACCAAGGCTCTTGGAGACTATACGAGGATGATTAATGA CTTTTCCGTATTGCCATCTGAACCAAGGGAGGGTCGGGTTGGGTCTTATTGGTATCATGAGGATACACATGCATTTTTTGACGATGTCGAACACTACAAG ATGGTTAAGGCAATGTGCAGACTCACATGCAGTGTATGCGACAAGGCAGAGGATGAGACGAATGACGGTGCCAAAAAGCGCTCCAAGTTTAGGAACATTG AGCAGCTGAAGGGTCATTTGTTTCACAAACATAAGTTGGTCATGTGTAGCCTGTGTTTGGAAGGGAGGAAGGTATTTATTTGTGAGCAAAAGCTGTATAC TAGATCACAGCTTAGTCAGCACATCAGCACAGGGGACTCTGAGGTCGATGGTAGTGAAAGTGAAAGAGGCGGGTTTAGGGGTCATCCCATGTGTGAATTT TGCAAGACTCCATTCTATGGCGAAAATGAGTTGTACTCCCATATGTCTAGAGATCACTACACCTGTCATATATGCCAAAGGCAGCACCCTGGACAATATG AATATTATAAAAACTACCAGGACCTAGAAATGCACTTTGGTCGTGACCATTTCCTCTGTGAGGATGAATCGTGCCTTGCCAAAAAAGGCATAATACGATT GAACATGGTGGCAGGATGTCCCGTTCGAAGCGTAATGCTGCTCTACAGGCATATACCAACAAGCTTTAGGTTTCACCGTGAACAAGATCCTCGTCATGGA AGGGGACGTACATCTCGGCGTGATGAATCTGATAATCAGCTTTCTATGGCAATACAAGCAAGTATGGATGCTTCTTTCCCTAGAGGAACATCTCATGACC CCCCATTGCCATCATCTAGTACCCAAGTTGCGGATCTTGGTTTTGATATGGATCCAGACGTTCAGCCTTTGGAATCATTATCTTTAACAGAATCTACTCC TTCAAGGTATCTTCAAGCCTTAGGGCACAGTTCTAGGAATGGAGCTTTGCAAGAGTCCGCCTTTCCTCCTCTTGCTATGGCTCCTAGTAGTAGCCAGCAG AAGCCCACACAAGAACCCGAAGGGTTACCAAATACGACTATGGCAACTCATCTTAGACGCAAGAACAAAGTAACTGTTGTTAGATCATCCCAGGGATGGG CGGCAAGTAATGGCCCTGCTTCCAGTAGTTCTACACAGTGGCCTGCCATAAATACTGCACCGTCAATTTCACAGAGTACTTCCAATGCTCCTTCAGTTTC CAGTCATGCAAGTCCTCCTGTTCGACGAGGGCATGCTCCTGGTCCTCCTGGACATCAAGGGAGCTCCAGTAGTTCTACACAGTGGCCTGCCATAAATAAT GCACCGTCAATCCCACACATTACTTTCAGTTCTCCTTCAGTTTCCATAGTGCATGCTCCTGGAAATCAAGGGAGAACCAGTAGAATGACTCATTCTGCAT CAGCTCCAAGTCTTGCTGAGAGTAGACTATCAAAGCCAACCGTTTCAGATTTCCCACCAGTTTCAGCAACACAAGTACAGAAAACACCCCCTGCTGCGCA AGTTGTGCCAAATGTTGAAGATGTTCAAACTGCAAACAGGTCTTTGGTTGAAAAAATTCGTGATGCCCTTCAGCATGACGAAGCCAAGTATGCTTCTTTC AAAGAAATCTCTGGTCAGTATCGTCAGGGTTCCATTAGCACTCCTAGGTACTTGGATAACGTGAGGCAGTTTGGATTGTCACATCTCGTTATCGAACTAG CTAGCCTATGTCCTGATCCTCAGAAGAAGCAGGAGTTGGTTGGAACCTATTACGATAGTTTGGAGAATAACGGCCAGCAGGAAAAGGTTAGTGGCCGTGG GGAAACCCAATTGCAGGAGAGTAAAGGTAAAAAGGGCAAGGGGGTAGCTACTGAAGGCAGTTCAAGGGACAGATTGGCCGACAACATTATCAGCACTGTT CGGACACTACAGTCAAACCACAAGCCTCAGGAGGAAGACGTTGAGGTGTTGTCCAAGGACGGGTACCGGAATTCTAAAGGCAAGTCAAGTTCAATGGCTG ATCAACGAAGTTCCAAACAGGGGAGCCAACGTGACTCTACATCTGGCGATGGATCTAAGTATAAGAAGAAAACTCCAAAGTTCCTCAGAGCGAGACTGGG TGATGGGTCAATGGCGGCAATGATAGACACGAGAGATTCTGAACCAGACCTGGATCCAGGTTCCCTTGCCGAAACATTAGATGGTAATGGTTTGCCTGTT CGTGGGGTGTGGCGAAAGGGAGGAAGTAAGAAACTGTTTGCTTAA
AA sequence Show only first row Show all	>Lus10004521 pacid=23182194 polypeptide=Lus10004521 locus=Lus10004521.g ID=Lus10004521.BGIv1.0 annot-version=v1.0 MDDSCAVCADSLEWVCYGACGHREVCSTCVARLRFIIEDRRCCICKTESNVVFVTKALGDYTRMINDFSVLPSEPREGRVGSYWYHEDTHAFFDDVEHYK MVKAMCRLTCSVCDKAEDETNDGAKKRSKFRNIEQLKGHLFHKHKLVMCSLCLEGRKVFICEQKLYTRSQLSQHISTGDSEVDGSESERGGFRGHPMCEF CKTPFYGENELYSHMSRDHYTCHICQRQHPGQYEYYKNYQDLEMHFGRDHFLCEDESCLAKKGIIRLNMVAGCPVRSVMLLYRHIPTSFRFHREQDPRHG RGRTSRRDESDNQLSMAIQASMDASFPRGTSHDPPLPSSSTQVADLGFDMDPDVQPLESLSLTESTPSRYLQALGHSSRNGALQESAFPPLAMAPSSSQQ KPTQEPEGLPNTTMATHLRRKNKVTVVRSSQGWAASNGPASSSSTQWPAINTAPSISQSTSNAPSVSSHASPPVRRGHAPGPPGHQGSSSSSTQWPAINN APSIPHITFSSPSVSIVHAPGNQGRTSRMTHSASAPSLAESRLSKPTVSDFPPVSATQVQKTPPAAQVVPNVEDVQTANRSLVEKIRDALQHDEAKYASF KEISGQYRQGSISTPRYLDNVRQFGLSHLVIELASLCPDPQKKQELVGTYYDSLENNGQQEKVSGRGETQLQESKGKKGKGVATEGSSRDRLADNIISTV RTLQSNHKPQEEDVEVLSKDGYRNSKGKSSSMADQRSSKQGSQRDSTSGDGSKYKKKTPKFLRARLGDGSMAAMIDTRDSEPDLDPGSLAETLDGNGLPV RGVWRKGGSKKLFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	0	1
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	5.7	0.7139
AT5G66820			unknown protein		Lus10009344 [exp]	5.9	0.7806
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	11.8	0.6810
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	12.0	0.6948
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10000312 [exp]	15.2	0.6804
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10036921 [exp]	15.3	0.6315
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	19.3	0.6683
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	21.0	0.7062
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	37.6	0.6896
AT5G22040			unknown protein		Lus10000457 [exp]	40.3	0.6862

Compare expression of checked genes

Lus10004521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.