Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17390 733 / 0 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT4G01850 729 / 0 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT1G02500 729 / 0 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) AT2G36880 705 / 0 MAT3 methionine adenosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010070 [exp] 774 / 0 AT4G01850 739 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Lus10009985 [exp] 761 / 0 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10038044 [exp] 758 / 0 AT3G17390 736 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10013828 [exp] 704 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10001395 [exp] 698 / 0 AT2G36880 723 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10023007 [exp] 698 / 0 AT2G36880 728 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10026541 [exp] 474 / 5e-169 AT2G36880 474 / 5e-169 methionine adenosyltransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G004100 [exp] 743 / 0 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.002G189200 [exp] 743 / 0 AT4G01850 741 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.014G114700 [exp] 743 / 0 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.008G099300 [exp] 742 / 0 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.010G153500 [exp] 739 / 0 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.006G123200 [exp] 701 / 0 AT2G36880 716 / 0.0 methionine adenosyltransferase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02772 [flax] [poplar] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [flax] [poplar] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain PF00438 [flax] [poplar] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004522 pacid=23182191 polypeptide=Lus10004522 locus=Lus10004522.g ID=Lus10004522.BGIv1.0 annot-version=v1.0 ATGGAGACCTTCCTATTTACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGCTCTGCGATCAGATCTCTGATGCAGTCCTGGACGCCTGCCTCGAGC AAGACCCTGACAGCAAGGTTGCATGCGAGACTTGCACCAAGACCAACATGGTCATGGTTTTCGGAGAGATCACCACCAAGGCCAAGGTCGACTATGAGAA GATCGTCCGTGACACCTGCCGCAACATCGGCTTCGTCTCTGATGATGTTGGACTTGATGCTGACAACTGCAAGGTTCTGGTCAACATCGAGCAGCAGAGC CCCGACATTGCTCAGGGTGTCCATGGCCACTTCACCAAGCGCCCTGAAGAGATCGGTGCCGGTGACCAAGGTCACATGTTTGGGTATGCTACCGATGAGA CACCCGAGTTGATGCCTTTGACGCATGTCCTAGCTACCAAGCTCGGAGCTAAACTCACCGAGGTCAGGAAGAACGGCACCTGCCCTTGGTTGAGACCTGA TGGCAAGACCCAGGTCACCGTCGAGTACTTCAACGAGAATGGTGCCATGGTTCCTGTACGTGTCCACACCGTCCTTATCTCGACTCAGCATGATGAGACG GTGACCAACGATGAAATCGCTGCTGACCTTAAGGAGCATGTGATCAAGCCTGTGATCCCAGAGAAGTACCTTGATGAGAAGACAATCTTCCACCTGAACC CATCGGGCCGTTTTGTGATCGGAGGCCCCCACGGTGATGCAGGGCTCACCGGCCGCAAGATCATCATCGACACCTATGGTGGATGGGGTGCCCACGGAGG AGGTGCTTTCTCAGGGAAGGACCCGACCAAGGTGGACAGGAGTGGTGCGTACATAGTGAGGCAGGCGGCCAAGAGCATTGTTGCCAGTGGGCTAGCCCGT AGGTGCATTGTGCAGGTGTCATATGCTATCGGTGTACCTGAGCCGTTGTCTGTGTTTGTGGACTCGTATGGAACTGGGAAGATCGCGGACAAGGAGATAC TAAGCATTGTGAAGGAGAAGTTTGACTTCAGGCCGGGGATGATGACCATCAACCTGGATCTGAAGAGGGGTGGGAATGGAAGGTACTTGAAGACTGCAGC ATACGGGCATTTCGGAAGGGACGACCCAGACTTCACCTGGGAGGTGGTTAAGCCCCTCAAGGCTGCTGACAAGCCCCAAGCTTAA
AA sequence Show only first row Show all	>Lus10004522 pacid=23182191 polypeptide=Lus10004522 locus=Lus10004522.g ID=Lus10004522.BGIv1.0 annot-version=v1.0 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQS PDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYFNENGAMVPVRVHTVLISTQHDET VTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR RCIVQVSYAIGVPEPLSVFVDSYGTGKIADKEILSIVKEKFDFRPGMMTINLDLKRGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKAADKPQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	0	1
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10043157 [exp]	1.4	0.9714
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	1.4	0.9729
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	2.6	0.9468
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	3.0	0.9573
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	4.5	0.9488
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	4.9	0.9484
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	5.7	0.9525
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	6.3	0.9467
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	6.3	0.9425
AT1G14890			Plant invertase/pectin methyle...		Lus10037919 [exp]	6.8	0.9244

Compare expression of checked genes

Lus10004522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.